Correlating Glycoforms of DC-SIGN with Stability Using a Combination of Enzymatic Digestion and Ion Mobility Mass Spectrometry

The immune scavenger protein DC-SIGN interacts with glycosylated proteins and has a putative role in facilitating viral infection. How these recognition events take place with different viruses is not clear and the effects of glycosylation on the folding and stability of DC-SIGN have not been reported. Herein, we report the development and application of a mass-spectrometry-based approach to both uncover and characterise the effects of O-glycans on the stability of DC-SIGN. We first quantify the Core 1 and 2 O-glycan structures on the carbohydrate recognition and extracellular domains of the protein using sequential exoglycosidase sequencing. Using ion mobility mass spectrometry, we show how specific O-glycans, and/or single monosaccharide substitutions, alter both the overall collision cross section and the gas-phase stability of the DC-SIGN isoforms. We find that rather than the mass or length of glycoprotein modifications, the stability of DC-SIGN is better correlated with the number of glycosylation sites.     

Transition-Metal Catalysis of Triene 6π Electrocyclization: The π-Complexation Strategy Realized

Triene 6π electrocyclization, wherein a conjugated triene undergoes a concerted stereospecific cycloisomerization to a cyclohexadiene, is a reaction of great historical and practical significance. In order to circumvent limitations imposed by the normally harsh reaction conditions, chemists have long sought to develop catalytic variants based upon the activating power of metal–alkene coordination. Herein, we demonstrate the first successful implementation of such a strategy by utilizing [(C₅H₅)Ru(NCMe)₃]PF₆ as a precatalyst for the disrotatory 6π electrocyclization of highly substituted trienes that are resistant to thermal cyclization. Mechanistic and computational studies implicate hexahapto transition-metal coordination as responsible for lowering the energetic barrier to ring closure. This work establishes a foundation for the development of new catalysts for stereoselective electrocyclizations.     

Rhodium-Catalyzed ortho-Bromination of O-Phenyl Carbamates Accelerated by a Secondary Amide-Pendant Cyclopentadienyl Ligand

It has been established that a newly developed cyclopentadienyl rhodium(III) [Cp^ARh^III] complex, bearing an acidic secondary amide moiety on the Cp ring, is able to catalyze the ortho-bromination of O-phenyl carbamates with N-bromosuccinimide (NBS) at room temperature. The presence of the acidic secondary amide moiety on the Cp^A ligand accelerates the bromination by the hydrogen bond between the acidic NH group of the Cp^A ligand and the carbonyl group of NBS.     

Photoredox/Cobalt Dual-Catalyzed Decarboxylative Elimination of Carboxylic Acids: Development and Mechanistic Insight

Recently, dual-catalytic strategies towards the decarboxylative elimination of carboxylic acids have gained attention. Our lab previously reported a photoredox/cobaloxime dual catalytic method that allows the synthesis of enamides and enecarbamates directly from N-acyl amino acids and avoids the use of any stoichiometric reagents. Further development, detailed herein, has improved upon this transformation's utility and further experimentation has provided new insights into the reaction mechanism. These new developments and insights are anticipated to aid in the expansion of photoredox/cobalt dual-catalytic systems.     

Mechanistic aspects of transition metal-catalyzed hydrogen transfer reactions

In this tutorial review recent mechanistic studies on transition metal-catalyzed hydrogen transfer reactions are discussed. A common feature of these reactions is that they involve metal hydrides, which may be monohydrides or dihydrides. An important question is whether the substrate coordinates to the metal (inner-sphere hydrogen transfer) or if there is a direct concerted transfer of hydrogen from the metal to substrate (outer-sphere hydrogen transfer). Both experimental and theoretical studies are reviewed.     

Fluorescence study of arene probe microenvironment in the intraparticle void volume of zeolites interfaced with bathing polar solvents

Fluorescence methodologies have been utilized to examine micropolarity, intramolecular motion, and singlet quenching in the intraparticle void volume of zeolites X, Y, and ultrastable Y (USY) interfaced with bathing polar solvents. Micropolarity was assessed from the 3-to-1 band ratio (III/I) of the fluorescence spectrum of pyrene (PY) and from lambda(max) of the fluorescence spectrum of 1-pyrenecarboxaldehyde (1-PCA). In zeolites bathed in anhydrous solvents, both PY and 1-PCA reported increased micropolarity according to the trend USY < bulk solvent < NaX approximately NaY. For example, in NaY (USY), III/I ranged from 0.44 (0.98) in acetonitrile to 0.52 (1.34) in n-hexanol, compared to 0.60, 1.06, and 1.62 in bulk acetonitrile (ACN), n-hexanol, and n-hexane, respectively. The polarity studies reveal that the ionic nature of NaX and NaY and the hydrophobic nature of USY strongly influence the microenvironment of the arene despite the presence of desorbing polar solvents. Constraints on intramolecular motion were examined in polar-solvated NaX through measurements of the fluorescence lifetime of trans-stilbene. Lifetimes ranged from 113 ps in NaX-ACN to 671 ps in NaX-tert-butyl alcohol. The latter value is close to that observed in bulk glycerol. Diffusion-controlled quenching of PY fluorescence by O2 and a series of nitrocompounds dissolved in solvents bathing the zeolite was examined by a time-resolved approach. For all of the quenchers and solvents studied, quenching was more efficient in USY compared to NaX and NaY. Interestingly, the rate of O2 quenching in USY-MeOH was only 12 times lower than that in bulk MeOH. In contrast, in NaY-MeOH and NaX-MeOH the rate of O2 quenching was too low to be measured. The rate constants in these systems were therefore taken as the rate constant for diffusion-controlled quenching of trapped electrons measured previously. These values were 600 times and 10(5) times lower than the rate of fluorescence quenching in USY-MeOH, respectively. The O2 quenching studies show that dispersive interactions of polar solvents with the cavity walls dominate in USY because of the hydrophobic nature of the USY surface. In NaX and NaY, stronger ion-dipole and hydrogen bonding interactions dominate and lead to more restricted access and lowered quenching efficiency. Perrin (or static) quenching of pyrene fluorescence was also examined to infer the concentration of nitromethane (NM) in the void volume of NaX and NaY bathed in MeOH, ACN, or H2O. The results indicate that access of NM to the interior of NaY is more inhibited in ACN compared to MeOH, presumably because of the higher dipole moment of ACN and its resulting stronger association with the zeolite surface. At similar levels of static quenching equated to a similar NM concentration in the zeolite, dynamic quenching by NM varied by no more than a factor of 2 in all systems compared. This implies that the rate of NM diffusion in solvated zeolite interiors is similar regardless of zeolite or solvent properties. In contrast to O2 diffusion in zeolites, NM exhibits a high dipole moment and can therefore migrate through polar-solvated zeolite apertures by adsorbing to the zeolite. Overall, the results of this study show a close relationship between the behavior of probes and quenchers in the confines of polar-solvated zeolite interiors and the chemical properties of the zeolite. Differences between weakly and strongly interacting surfaces are revealed clearly in the results.     

Magnetic tuning of the electrochemical reactivity through controlled surface orientation of catalytic nanowires

Nanowires have received considerable attention owing to their broad potential applications. We report here on the application of nanowires for magnetic control of the electrochemical reactivity and demonstrate how one can modulate the electrocatalytic activity by orienting catalytic nanowires at different angles. Unlike early "on/off" magnetic switching studies based on functionalized magnetic spheres, the present magnetoswitchable protocol relies on modulating the electrochemical reactivity without removing the magnetic material from the surface. Such behavior is attributed to the reversible blocking of the redox processes and to changes in the tortuosity-dependent flux rate. The nanowire-based magnetoswitchable protocol may be extremely useful for adjusting the electrochemical reactivity, such as for tuning the power output of fuel cells (rather than switching the power on/off).     

One-dimensional energy/electron transfer through a helical channel

We have synthesized A-D-A-type linear chain chromophores based on oligo(phenylene vinylene) as an electron donor (D) and several electron/energy acceptors (A), which are linked by an alkyl spacer with various lengths and are processed for a helical encapsulation with amylose. Photoinduced electron/energy transfers (eT/ET) of the chromophores are investigated in the presence and absence of the helical encapsulation with respect to D-A distance. Fluorescence intensity of the free chromophores is unusually small, not due to the advancement of eT/ET but most likely to self-quenching by aggregation and/or conformational flexibility in solution. By contrast, the helically encapsulated chromophores exhibit highly efficient eT/ET over a long D-A distance and a well-defined distance effect depending on the acceptor strength.     

Theoretical studies of quantum amplified isomerizations for imaging systems involving hexamethyl Dewar benzene and related systems

The ring-opening reactions of the radical cations of hexamethyl Dewar benzene (1) and Dewar benzene have been studied using density functional theory (DFT) and complete active-space self-consistent field (CASSCF) calculations. Compound 1 is known to undergo photoinitiated ring opening by a radical cation chain mechanism, termed "quantum amplified isomerization" (QAI), which is due to the high quantum yield. Why QAI is efficient for 1 but not other reactions is explained computationally. Two radical cation minima of 1 and transition states located near avoided crossings are identified. The state crossings are characterized by conical intersections corresponding to degeneracy between doublet surfaces. Ring opening occurs by formation of the radical cation followed by a decrease in the flap dihedral angle. A rate-limiting Cs transition state leads to a second stable radical cation with an elongated transannular C-C bond and an increased flap dihedral. This structure proceeds through a conrotatory-like pathway of Cs symmetry to give the benzene radical cation. The role of electron transfer was investigated by evaluating oxidation of various systems using adiabatic ionization energies and electron affinities calculated from neutral and cation geometries. Electron-transfer theory was applied to 1 to investigate the limiting effects of back-electron transfer as it is related to the unusual stability of the two radical cations. Expected changes in optical properties between reactants and products of Dewar benzene compounds and other systems known to undergo QAI were characterized by computing frequency-dependent indices of refraction from isotropic polarizabilities. In particular, the reaction of 1 shows greater contrast in index of refraction than that of the Dewar benzene parent system.     

Tunable columnar mesophases utilizing C2 symmetric aromatic donor-acceptor complexes

Derivatives of relatively electron rich 1,5-dialkoxynaphthalene (Dan) donors and relatively electron deficient 1,4,5,8-naphthalenetetracarboxylic diimide (Ndi) acceptors have been exploited in the folding and self-assembly of a variety of complex molecular systems in solution. Here, we report the use of Dan and Ndi derivatives to direct assembly of extended columns with alternating face-centered stacked structure in the solid state. A variety of 1:1 Dan:Ndi mixtures produced mesophases that were found to be stable over temperature ranges extending up to 110 degrees C. Analysis of these mesophases indicates mixtures with soft/plastic crystal phases and a few mixtures with the thermodynamic properties of true liquid crystals, all composed of alternating donor-acceptor columns within. Importantly, a correspondence was found between the clearing and crystallization points of the mesophase mixtures and the melting/clearing points of the component Ndi and Dan units, respectively. This correspondence enables the predictable tuning of mesophase phase transition temperatures. The study of sterically hindered derivatives led to a set of mixtures in which a dramatic and sudden color change (deep red to yellow) was observed upon crystallization of the mesophase due to a phase separation of the component donor and acceptor units.