Determining a helical protein structure using peptide pixels

The residual dipolar coupling-periodicity planarity correlation makes it possible to determine peptide plane orientations in regular periodic protein secondary structure elements. Each peptide plane orientation represents a "pixel" of protein structure, and is expressed in terms of three angles referred to as tilt, phase, and pitch angles. In this report, we present the novel "3P" (periodicity, planarity, and pixels) method that allows one to determine secondary and tertiary structure of alpha-helical proteins. We demonstrate the 3P method by determining the structure of domain 1 of the receptor-associated protein (RAP) to a backbone accuracy of 1.0 Angstrom using RDCs measured in a single alignment medium, together with a minimal number of NOE distance restraints, using a new Xplor-NIH module.     

Riemannian manifolds in noncommutative geometry

We present a definition of Riemannian manifold in noncommutative geometry. Using products of unbounded Kasparov modules, we show one can obtain such Riemannian manifolds from noncommutative spin^c${}^c$ manifolds; and conversely, in the presence of a spin^c${}^c$ structure. We also show how to obtain an analogue of Kasparov’s fundamental class for a Riemannian manifold, and the associated notion of Poincaré duality. Along the way we clarify the bimodule and first-order conditions for spectral triples.     

The maximal process of nonlinear shot noise

In the nonlinear shot noise system-model shots’ statistics are governed by general Poisson processes, and shots’ decay-dynamics are governed by general nonlinear differential equations. In this research we consider a nonlinear shot noise system and explore the process tracking, along time, the system’s maximal shot magnitude. This ‘maximal process’ is a stationary Markov process following a decay-surge evolution; it is highly robust, and it is capable of displaying both a wide spectrum of statistical behaviors and a rich variety of random decay-surge sample-path trajectories. A comprehensive analysis of the maximal process is conducted, including its Markovian structure, its decay-surge structure, and its correlation structure. All results are obtained analytically and in closed-form.     

Equivariant quantization on quotients of simple Lie groups by reductive subgroups of maximal rank

We consider a class of homogeneous manifolds including all semisimple coadjoint orbits. We describe manifolds of that class admitting deformation quantizations equivariant under the action ofG and the corresponding quantum group. We also classify Poisson brackets relating to such quantizations. Presented at the 11th Colloquium “Quantum Groups and Integrable Systems”, Prague, 20–22 June 2002.     

Quantum Dot Research: Current State and Future Prospects

This article reviews the current state of research involving semiconductor quantum dots, provides a brief review of the theory behind their unique properties, and an introduction explaining the importance of quantum dot research. The characteristic shifting of the band gap energy with quantum dot size, as predicted from the density of states for low-dimensional structures, allows experimental measurements to determine the extent to which quantum confinement effects play a role in the resulting properties. A few of the current techniques used to measure the presence and physical characteristics of quantum dots and their energy levels is reviewed, including transmission electron microscopy, optical transmission, and Raman and photoluminescence spectroscopy. Finally, some of the more exciting applications for quantum dots currently being researched for use in the field of optoelectronics are reviewed, including quantum dot infrared photodetectors, quantum dot lasers, and quantum dot solar cells. Comments are made on the current progress and the future prospects of quantum dot research and device applications.     

The relative detectability for mice of gaps having different ramp durations at their onset and offset boundaries

The effect on gap detectability of varying noise fall time (FT) and rise time (RT) of the gap boundary ramps was examined in mice using reflex modification audiometry, measuring inhibition of acoustic startle reflexes by variously shaped gaps just preceding reflex expression. In experiment 1 (n = 12) inhibition increased up to near-asymptotic values with longer FT (0, 1, 2, 3, 5, or 10 ms) and QT (quiet time, 0 to 13 ms), with a 2:1 trade-off between FT and QT. In experiment 2 (n = 24) inhibition increased for any RT above 0 ms (2, 3, 5, or 7 ms) if QT= 1 ms, but diminished with increased RT when QT = 3 or 8 ms. Enhanced detectability for subthreshold gaps by longer ramps results from their extending the apparent gap duration. The negative effect of increased RT for threshold gaps suggests the importance for gap detection of the stronger neural responses to sharp edges at the end of the gap shown previously in the mouse inferior colliculus. These effects are specific to gaps: inhibition for fixed (70-dB SPL) or varied level pulses (30 to 60 dB) was unaffected by varying the ramped edges (experiments 3 and 4, n = 9).     

Quinoline formation via a modified Combes reaction: examination of kinetics,substituent effects,and mechanistic pathways

This is the first reported investigation of the Combes condensation employing 19F NMR spectroscopy to monitor intermediate consumption and product formation rates. The reaction was found to be first order in both the diketone and aniline. Product regioselectivity and reaction rates were found to be influenced by substituents on the diketones and anilines with rates varying as much as five fold. The consumption rate of key imine and enamine intermediates mirrored quinoline formation rates, in accord with rate determining annulation. A ρ of ?0.32 was determined for this cyclization. While the sign of the reaction constant is consistent with rate limiting electrophilic aromatic substitution (EAS), the magnitude is likely a composite value, resulting from opposing substituent effects in the nucleophilic addition and EAS steps. Mechanistic details and reaction pathways supporting these findings are proposed. Copyright © 2008 John Wiley & Sons, Ltd.     

Power limitations in fiber-optic frequency-division multiplexed systems

Abstract

Launch power is limited to the milliwatt level by stimulated Brillouin scattering (SBS) in a single-channel, coherent fiber-optic network. Increasing the number of frequency-division multiplexed channels causes the power limit to decrease quickly to submilliwatt levels due to three-wave intermodulation to keep the signal-to-noise ratio from deteriorating significantly. As the number of channels increases, stimulated Raman scattering (SRS) begins to dominate. If a maximum of 0.5–dB depletion in the highest-frequency channel is allowed, SRS dominates when the number of multiplexed channels reaches about 300. Generally, the launch-power-limiting phenomenon is dependent on the number of channels being multiplexed.     

Low-energy electron beam source

Experimental results of research into a ferroelectric-plasma-source-assisted hollow anode (HA) discharge as a source of low-energy electron beams are presented. To generate electron beams, the HA auto-bias negative voltage was achieved by the discharge current flowing through the resistor connecting the HA and the grounded electrode. It is shown that this method allows reliable and reproducible generation of low-energy electron beams with electron energy of several hundreds of eV, electron current density up to several A/cm² and pulse duration of several tens of microseconds.