Allometric scaling laws of metabolism

One of the most pervasive laws in biology is the allometric scaling, whereby a biological variable Y is related to the mass M of the organism by a power law, Y=Y₀M^b, where b is the so-called allometric exponent. The origin of these power laws is still a matter of dispute mainly because biological laws, in general, do not follow from physical ones in a simple manner. In this work, we review the interspecific allometry of metabolic rates, where recent progress in the understanding of the interplay between geometrical, physical and biological constraints has been achieved.

For many years, it was a universal belief that the basal metabolic rate (BMR) of all organisms is described by Kleiber's law (allometric exponent b=3/4). A few years ago, a theoretical basis for this law was proposed, based on a resource distribution network common to all organisms. Nevertheless, the 3/4-law has been questioned recently. First, there is an ongoing debate as to whether the empirical value of b is 3/4 or 2/3, or even nonuniversal. Second, some mathematical and conceptual errors were found these network models, weakening the proposed theoretical arguments. Another pertinent observation is that the maximal aerobically sustained metabolic rate of endotherms scales with an exponent larger than that of BMR. Here we present a critical discussion of the theoretical models proposed to explain the scaling of metabolic rates, and compare the predicted exponents with a review of the experimental literature. Our main conclusion is that although there is not a universal exponent, it should be possible to develop a unified theory for the common origin of the allometric scaling laws of metabolism.     

Dilatancy Transition in a Granular Model

We introduce a model of granular matter and use a volume/strain ensemble to analyze infinitesimal shearing. Monte Carlo simulation suggests the model exhibits a second order phase transition associated with the onset of dilatancy.     

Factorization and Dilation Problems for Completely Positive Maps on von Neumann Algebras

We study factorization and dilation properties of Markov maps between von Neumann algebras equipped with normal faithful states, i.e., completely positive unital maps which preserve the given states and also intertwine their automorphism groups. The starting point for our investigation has been the question of existence of non-factorizable Markov maps, as formulated by C. Anantharaman-Delaroche. We provide simple examples of non-factorizable Markov maps on M_n(\mathbbC){M_n(\mathbb{C})} for all n ≥ 3, as well as an example of a one-parameter semigroup (T(t)) _t≥0 of Markov maps on M₄(\mathbbC){M_4(\mathbb{C})} such that T(t) fails to be factorizable for all small values of t > 0. As applications, we solve in the negative an open problem in quantum information theory concerning an asymptotic version of the quantum Birkhoff conjecture, as well as we sharpen the existing lower bound estimate for the best constant in the noncommutative little Grothendieck inequality.     

Splitting Quantum Information with Five-Atom Cluster State in Cavity QED

A realizable scheme is proposed for implementing quantum information splitting with five-atom cluster state in cavity QED, where we explicitly illustrate the procedure. The scheme does not involve Bell-state measurement and is insensitive to the cavity and the thermal field.     

The More the Merrier?

The trade-off between traits in life-history strategies has been widely studied for sexual and parthenogenetic organisms, but relatively little is known about the reproduction strategies of asexual animals. Here, we investigate clonal reproduction in the freshwater planarian Schmidtea mediterranea, an important model organism for regeneration and stem cell research. We find that these flatworms adopt a randomized reproduction strategy that comprises both asymmetric binary fission and fragmentation (generation of multiple offspring during a reproduction cycle). Fragmentation in planarians has primarily been regarded as an abnormal behavior in the past; using a large-scale experimental approach, we now show that about one third of the reproduction events in S. mediterranea are fragmentations, implying that fragmentation is part of their normal reproductive behavior. Our analysis further suggests that certain characteristic aspects of the reproduction statistics can be explained in terms of a maximum relative entropy principle.     

Slicing and Dicing the Genome: A Statistical Physics Approach to Population Genetics

The inference of past demographic parameters from current genetic polymorphism is a fundamental problem in population genetics. The standard techniques utilize a reconstruction of the gene-genealogy, a cumbersome process that may be applied only to small numbers of sequences. We present a method that compares the total number of haplotypes (distinct sequences) with the model prediction. By chopping the DNA sequence into pieces we condense the immense information hidden in sequence space into a function for the number of haplotypes versus subsequence size. The details of this curve are robust to statistical fluctuations and are seen to reflect the process parameters. This procedure allows for a clear visualization of the quality of the fit and, crucially, the numerical complexity grows only linearly with the number of sequences. Our procedure is tested against both simulated data as well as empirical mtDNA data from China and provides excellent fits in both cases.     

Observables in 3d spinfoam quantum gravity with fermions

We study expectation values of observables in three-dimensional spinfoam quantum gravity coupled to Dirac fermions. We revisit the model introduced by one of the authors and extend it to the case of massless fermionic fields. We introduce observables, analyse their symmetries and the corresponding proper gauge fixing. The Berezin integral over the fermionic fields is performed and the fermionic observables are expanded in open paths and closed loops associated to pure quantum gravity observables. We obtain the vertex amplitudes for gauge-invariant observables, while the expectation values of gauge-variant observables, such as the fermion propagator, are given by the evaluation of particular spin networks.     

The Entanglement Properties Induced by Atoms in Two Separate Cavities Connected by an Optical Fiber

We study the entanglement evolution between two atoms, which are initially entangled with a third atom and trapped in two separated cavities coupled by an optical fiber. We also investigate the temporal evolution in the entanglement between the atom and the local cavity mode. The influence of the state-selective measurement on the atom outside the cavities and the influence of cavity-fiber coupling coefficient on the entanglement are discussed. The results show that the entanglement can be strengthened through the state-selective measurement on the atom outside the cavities. We also find that, by increasing the cavity-fiber coupling coefficient, the atom-atom entanglement is strengthened, but the atom-cavity entanglement is weakened.     

Pseudo-Hyperkähler Geometry and Generalized Kähler Geometry

We discuss the conditions for additional supersymmetry and twisted super-symmetry in N = (2, 2) supersymmetric nonlinear sigma models described by one left and one right semi-chiral superfield and carrying a pair of non-commuting complex structures. Focus is on linear non-manifest transformations of these fields that have an algebra that closes off-shell. We find that additional linear supersymmetry has no interesting solution, whereas additional linear twisted supersymmetry has solutions with interesting geometrical properties. We solve the conditions for invariance of the action and show that these solutions correspond to a bi-hermitian metric of signature (2, 2) and a pseudo-hyperkähler geometry of the target space.