Synthetic gene network for entraining and amplifying cellular oscillations

We present a model for a synthetic gene oscillator and consider the coupling of the oscillator to a periodic process that is intrinsic to the cell. We investigate the synchronization properties of the coupled system, and show how the oscillator can be constructed to yield a significant amplification of cellular oscillations. We reduce the driven oscillator equations to a normal form, and analytically determine the amplification as a function of the strength of the cellular oscillations. The ability to couple naturally occurring genetic oscillations to a synthetically designed network could lead to possible strategies for entraining and/or amplifying oscillations in cellular protein levels.     

Pions as spin waves: Chiral symmetry breaking in lattice gauge theory

In hamiltonian lattice gauge theory, the fermion vacuum at lowest order in 1/g² can be determined from degenerate perturbation theory plus mean field-spin wave techniques. Using compact QED as an example, we show that: (i) chiral symmetry is spontaneously broken; and (ii) $\text{m}{}_{\mathrm{<mtext>pseudoGoldstone</mtext>}}{}^2\text{∝ m}{}_{\mathrm{<mtext>fermion</mtext>}}\text{〈}\text{ψ}\text{ψ〉}$. The pseudoscalar pseudoGoldstone particles—the “pions” of this abelian theory—correspond to antiferromagnetic spin wave excitations of the fermion vacuum.     

Mimicking dihydroxy acetone phosphate-utilizing aldolases through organocatalysis: a facile route to carbohydrates and aminosugars

[reaction: see text] A practical and environmentally friendly organocatalytic strategy designed to mimic the DHAP aldolases has been developed and shown to be effective in the preparation of carbohydrates and aminosugars. (S)-Proline and (S)-2-pyrrolidine-tetrazole catalyzed the aldol reaction between dihydroxy acetone variants such as 1,3-dioxan-5-one and 2,2-dimethyl-1,3-dioxan-5-one with aldehydes to give the corresponding polyols in good yields with very high ees.     

Ultrasonic wave propagation across a thin nonlinear anisotropic layer between two half-spaces

Boundary conditions and perturbation theory are combined to create a set of equations which, when solved, yield the reflected and transmitted wave forms in the case of a thin layer of material that is perfectly bonded between two isotropic half-spaces. The set of perturbed boundary conditions is created by first using the fully bonded boundary conditions at each of the two interfaces between the thin layer and the half-spaces. Then, by restricting the layer's thickness to be much smaller than an acoustic wavelength, perturbation theory can be used on these two sets of boundary equations, producing a set of equations which effectively treat the thin layer as a single interface via a perturbation term. With this set of equations, the full range of incident and polar angles can be considered, with results general enough to use with a layer that is anisotropic, nonlinear, or both anisotropic and nonlinear. Finally the validity of these equations is discussed, comparing the computer simulation results of this theory to results from standard methods, and looking at cases where the results (or various properties of the results) are known or can be predicted.     

Novel porphyrin-fullerene assemblies: from rotaxanes to catenanes

[reaction: see text] Titration of porphyrin-fullerene rotaxanes with DABCO or 4,4'-bipyridine led to photo- and redoxactive catenanic architectures, which upon photoexcitation undergo a sequence of short-range energy and electron transfer events to give a long-lived charge-separated radical-pair state.     

Trends in exchange coupling for trimethylenemethane-type Bis(semiquinone) biradicals and correlation of magnetic exchange with mixed valency for cross-conjugated systems

A magnetostructural correlation (conformational electron spin exchange modulation) within an isostructural series of biradical complexes is presented. X-ray crystal structures, variable-temperature electron paramagnetic resonance spectroscopy, zero-field splitting parameters, and variable-temperature magnetic susceptibility measurements were used to evaluate molecular conformation and electron spin exchange coupling in this series of molecules. Our combined results indicate that the ferromagnetic portion of the exchange couplings occurs via the cross-conjugated pi-systems, while the antiferromagnetic portion occurs through space and is equivalent to incipient bond formation. Thus, molecular conformation controls the relative amounts of ferro- and antiferromagnetic contributions to exchange coupling. In fact, the exchange parameter correlates with average semiquinone ring torsion angles via a Karplus-Conroy-type relation. Because of the natural connection between electron spin exchange coupling and electronic coupling related to electron transfer, we also correlate the exchange parameters in the biradical complexes to mixed valency in the corresponding quinone-semiquinone radical anions. Our results suggest that delocalization in the cross-conjugated, mixed-valent radical anions is proportional to the ferromagnetic contribution to the exchange coupling in the biradical oxidation states.     

Conformally invariant Monge-Ampère equations: Global solutions

In this paper we will examine a class of fully nonlinear partial differential equations which are invariant under the conformal group . These equations are elliptic and variational. Using this structure and the conformal invariance, we will prove a global uniqueness theorem for solutions in with a quadratic growth condition at infinity.