Heteronuclear selective refocusing 2D NMR experiments for the spectral analysis of enantiomers in chiral oriented solvents

We report the use of carbon-proton heteronuclear selective refocusing 2D NMR experiments dedicated to the spectral analysis of enantiomers dissolved in weakly ordering chiral liquid crystalline solvents. The method permits the extraction of carbon-proton residual dipolar couplings for each enantiomer from a complex or unresolved proton-coupled 13C spectral patterns. Illustrative examples are analysed and discussed. It is shown that an accurate determination of enantiomeric excess is possible.     

Molecular dynamics at the root of expansion of function in the M69L inhibitor-resistant TEM beta-lactamase from Escherichia coli

Clavulanate, an inhibitor for beta-lactamases, was the very first inhibitor for an antibiotic resistance enzyme that found clinical utility in 1985. The clinical use of clavulanate and that of sulbactam and tazobactam, which were introduced to the clinic subsequently, has facilitated evolution of a set of beta-lactamases that not only retain their original function as resistance enzymes but also are refractory to inhibition by the inhibitors. This article characterizes the properties of the clinically identified M69L mutant variant of the TEM-1 beta-lactamase from Escherichia coli, an inhibitor-resistant beta-lactamase, and compares it to the wild-type enzyme. The enzyme is as active as the wild-type in turnover of typical beta-lactam antibiotics. Furthermore, many of the parameters for interactions of the inhibitors with the mutant enzyme are largely unaffected. The significant effect of the inhibitor-resistant trait was a relatively modest elevation of the dissociation constant for the formation of the pre-acylation complex. The high-resolution X-ray crystal structure for the M69L mutant variant revealed essentially no alteration of the three-dimensional structure, both for the protein backbone and for the positions of the side chains of the amino acids. It was surmised that the difference in the two enzymes must reside with the dynamic motions of the two proteins. Molecular dynamics simulations of the mutant and wild-type proteins were carried out for 2 ns each. Dynamic cross-correlated maps revealed the collective motions of the two proteins to be very similar, yet the two proteins did not behave identically. Differences in behavior of the two proteins existed in the regions between residues 145-179 and 155-162. Additional calculations revealed that kinetic effects measured experimentally for the dissociation constant for the pre-acylation complex could be mostly attributed to the electrostatic and van der Waals components of the binding free energy. The effects of the mutation on the behavior of the beta-lactamase were subtle, including the differences in the measured dissociation constants that account for the inhibitor-resistant trait. It would appear that nature has selected for incorporation of the most benign alteration in the structure of the wild-type TEM-1 beta-lactamase that is sufficient to give the inhibitor-resistant trait.     

Toward new camptothecins. Part 4: On the reactivity of nitro and amino precursors of aza analogs of 5-methoxycarbonyl camptothecin

In the context of formation of new aza analogs of camptothecin, nitration then reduction of condensed pyridones was realized, leading to new derivatives of pyrrolo-aza-indoles. Treatment of these compounds with hydrobromic acid led to new structure rearrangements while oxidation of the α-position was unsuccessful. Mechanisms of formation of the new products are discussed.     

Amino acid-type edited NMR experiments for methyl-methyl distance measurement in 13C-labeled proteins

New NMR experiments are presented for the measurement of methyl-methyl distances in (13)C-labeled proteins from a series of amino acid-type separated 2D or 3D NOESY spectra. Hadamard amino acid-type encoding of the proximal methyl groups provides the high spectral resolution required for unambiguous methyl-methyl NOE assignment, which is particularly important for fast global fold determination of proteins. The experiments can be applied to a wide range of protein systems, as exemplified for two small proteins, ubiquitin and MerAa, and the 30 kDa BRP-Blm complex.     

The use of advanced calorimetric techniques in polymer synthesis and characterization

Progress in the understanding of polymer synthesis, including the crucial step of initiation and undesired side reactions, and in characterization of polymers, especially their thermal behaviour, are directly related to advances in calorimetric technologies.

In polymer synthesis, since polymerization reactions are highly exothermic, reaction calorimetry (RC) is an appropriate technique for on-line process monitoring. Measurements are non-invasive, rapid, and straightforward. Viscosity increase and fouling at the reactor wall are typical features of many polymerizations. The global heat transfer coefficient, UA, also changes drastically when viscosity increases and affects the accuracy of calorimetric measurements. Our approach was focused on oscillating temperature calorimetry (TOC). Reactions were performed with two different reaction calorimeters, i.e. an isoperibolic calorimeter and a Calvet-type high sensitivity differential calorimeter, respectively. Special attention was paid to the interpretation of the measured signals to obtain reliable calorimetric data. The evolution of heat transfer coefficient was followed by performing two Joule effect calibration experiments, before and after the reaction, and the two values interpolated to obtain the desired profile of UA. A differentiation method based on the convolution of the measured heat flow by the generated one was used for determining the time constants and deconvoluting the measured heat flow.

With respect to polymer characterization, pressure-controlled scanning calorimetry, also called scanning transitiometry, is now a well established technique. The transitiometer was coupled to an ultracryostat to work at low temperature. The assembly was used to follow the pressure effect on phase change phenomena such as fusion/crystallization and glass transition temperature T_g of low molecular weight substances or high molecular weight polymers.     

The fate of dicationic states in molecular clusters of benzene and related compounds

Calculations employing density functional theory indicate that, rather than undergoing fragmentation, dicationic clusters of benzene, hexafluorobenzene, and naphthalene produced by sequential one-electron or sudden double-ionization experiments on the neutrals can relax via the formation of inter-ring covalent C-C bonds, along with a series of proton transfers that enable a substantial reduction of inter- and intramolecular Coulomb repulsions. The theoretically predicted chemically bound structures correspond to deep local energy minima on the potential energy surface pertaining to the lowest electronic state of the dications and can therefore be regarded as metastable (kinetically long-lived) species. This discovery invalidates on theoretical grounds the liquid-droplet model of multiply charged clusters and sheds very unexpected light on possible consequences in chemistry of the intermolecular Coulombic decay (ICD) mechanism [Cederbaum, L. S.; et al. Phys. Rev. Lett. 1997, 79, 4778; Jahnke, T.; et al. Phys. Rev. Lett. 2004, 93, 163401] for deep inner-valence ionized states. Propagation of charge rearrangement reactions and proton transfers to several monomers may eventually lead to the formation of rather extended dicationic assemblies.     

Impact of azaproline on amide cis-trans isomerism: conformational analyses and NMR studies of model peptides including TRH analogues

The beta-turn is a well-studied motif in both proteins and peptides. Four residues, making almost a complete 180 degree-turn in the direction of the peptide chain, define the beta-turn. Several types of the beta-turn are defined according to Phi and Psi torsional angles of the backbone for residues i + 1 and i + 2. One special type of beta-turn, the type VI-turn, usually contains a proline with a cis-amide bond at residue i + 2. In an aza-amino acid, the alpha-carbon of the amino acid is changed to nitrogen. Peptides containing azaproline (azPro) have been shown to prefer the type VI beta-turn both in crystals and in organic solvents by NMR studies. MC/MD simulations using the GB/SA solvation model for water explored the conformational preferences of azPro-containing peptides in aqueous systems. An increase in the conformational preference for the cis-amide conformer of azPro was clearly seen, but the increased stability was relatively minor with respect to the trans-conformer as compared to previous suggestions. To test the validity of the calculations in view of the experimental data from crystal structures and NMR in organic solvents, [azPro(3)]-TRH and [Phe(2), azPro(3)]-TRH were synthesized, and their conformational preferences were determined by NMR in polar solvents as well as the impact of the azPro substitution on their biological activities.     

A novel tetranuclear copper(II) complex with alternating mu 1,1-azido and phenoxo bridges: synthesis,structure, and magnetic properties of [Cu4(mu-salen)2(mu 1,1-N3)2(N3)2

A novel tetranuclear copper(II) complex containing alternating mu(1,1)-azido and monophenoxo bridges has been synthesized and characterized by spectroscopic methods, X-ray single-crystal analysis, and variable-temperature magnetic measurements. The magnetic behavior, investigated in the temperature range 2-300 K, indicates that the interactions between copper ions are antiferromagnetic in nature for both azido and phenoxo bridges. The temperature dependence of the magnetic susceptibility was fitted with J(1) = -12.8 cm(-1), J(2) = -10 cm(-1), g = 2.171, 2.1% paramagnetic component, and negligible temperature-independent paramagnetism (5 x 10(-8)). At variance with the earlier reports of these types of complexes containing a mu(1,1)-azido group, the end-on double-azido-bridged copper(II) center in this complex shows an antiferromagnetic interaction.     

Accelerated methods of synthesis of phosphorus-containing dendrimers

In order to shorten the long and tedious synthesis of dendrimers, several improvements have been proposed. This paper is a review of the improved methods recently published concerning the synthesis of phosphorus-containing dendrimers. It describes first the synthesis of hyperbranched polymers and their comparison with real dendrimers obtained from the same monomer. Then, the influence of the modification of the core of dendrimers is shown. In a third part, the use of dendrons is illustrated by several examples; they allow for instance to built a generation 8 directly from a generation 3 dendrimer. The last part describes the use of branched monomers of types AB₂ and CD₂, in which A reacts only with D and B reacts only with C. These reactions do not need any protecting groups, and the only by-products are H₂O and N₂. Using these monomers, the 4th generation is obtained in only four steps, instead of 8 for classical methods. This method has been improved by using more branched monomers AB₅ and CD₅, built from the cyclotriphosphazene. In this case, a dendrimer having 750 end groups is obtained in only three steps. The A (NH₂), B (PPh₂), C (N₃) and D (CHO) functions are identical in all cases, and they allow a real “Lego” chemistry, as shown by the synthesis of CA₂ and DB₂ monomers, also used for the accelerated synthesis of dendrimers.     

Aza-2-diènes-1,3 3. Nouvelles voies d'accès à des amino-2-pyrazines substituées

2-Aza-1,3-dienes. A New Approach to Substituted 2-Aminopyrazines Treatment of enamines by tosylated isonitrosomalono derivatives gives access to 5-dialkylamino-1, 1-dicyano 2-aza-1,3-dienes (or 1-methoxycarbonyl analogous) which are precursors of various regiospecific 5,6-substituted 2-amino-3-cyano (or methoxycarbonyl) pyrazines. Some examples of utilisation of these intermediates for synthesis of lumazines, pteridines, and other bicyclic skeletons are described.