Structural analysis of permethylated oligosaccharides using electrospray ionization quadrupole time-of-flight tandem mass spectrometry and deutero-reduction

Deutero-reduced permethylated oligosaccharides were analyzed by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (MS/MS) using a hybrid quadrupole orthogonal acceleration time-of-flight mass spectrometer, fitted with a nanoflow ESI source. Under these ionization conditions such derivatives preferentially form sodiated molecular species in addition to protonated molecular species. Under collision-induced dissociation, protonated and sodiated molecular species yield simple and predictable fragment mass spectra. A systematic study was conducted on a series of deutero-reduced permethylated glycans to allow rationalization of the fragmentation processes. MS/MS spectra were characterized by fragments resulting from the cleavage of glycosidic bonds. These fragments originating from both the reducing and the non-reducing ends of the glycan yield information on sequence and branching. Furthermore, the substituent 3-linked to a HexNAc unit was readily eliminated. Special attention was devoted to a systematic study of fucosylated glycans. The fucosylated deutero-reduced permethylated glycans were submitted to an acidic hydrolysis, releasing specifically the fucosyl residues. The nascent free hydroxyl groups were subsequently CD3-labelled in order to determine the positions initially bearing the fucosyl residues along the oligosaccharide backbone. This methodology was finally applied to characterize a glycan pool enzymatically released from glycoproteins. The present data show that structural elucidation can be achieved at the 50 fmol level.     

Sequencing of oligosaccharides derivatized with benzylamine using electrospray ionization-quadrupole time of flight-tandem mass spectrometry

Oligosaccharides were derivatized by reductive amination using benzylamine and analyzed by nanoelectrospray ionization-quadrupole time of flight-tandem mass spectrometry (nanoESI-QTOF-MS/MS) in the positive ion mode. The major signals were obtained under these conditions from the [M+H]+ ions for all benzylamine-derivatized oligosaccharides. To obtain structural information from these derivatized oligosaccharides, MS/MS was applied. Protonated molecular ions underwent extensive fragmentation, even under low-energy collision-induced dissociation. MS/MS spectra of [M+H]+ ions are characterized by simple fragmentation patterns which result from cleavage of the glycosidic bonds and thus allow a straightforward interpretation. Fragmentation of the [M+H]+ ions gave predominantly B- and Y-type glycosidic fragments. A systematic study of various oligosaccharides showed that information on sugar sequence and branching could easily be obtained. Predictable and reproducible fragmentation patterns could be obtained in all cases. This derivatization procedure and mass spectrometric methodology were applied successfully to neutral and acidic glycans released from 10 microg of glycoproteins separated by gel electrophoresis. Moreover, the derivatives retain their sensitivity to exoglycosidases. Thus a series of sequential on-target exoglycosidase treatments combined with matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS) was found to be useful for the determination of structural features of the glycans released from proteins separated by gel electrophoresis such as the monosaccharide sequence, branching pattern, and anomeric configurations of the corresponding glycosidic linkages. Our strategy can be used successfully to assign the major glycans released from proteins separated by gel electrophoresis.     

Electrospray mass spectrometric study of anionic complexes of enkephalins with Cu(II): regioselective distinction of Leu/Ile at the C-terminus induced by metal reduction

The yield of metallation of methionine-enkephalin and leucine-enkephalin isomers by copper(II) chloride was investigated by electrospray ionization ion trap mass spectrometry (ESI-ITMS) in negative ionization mode. Binary ([(M-3H)+Cu(II)](-)) and ternary ([(M-3H)+Cu(II)Cl](-)) complexes were observed. Soft and hard desolvation conditions (by changing the declustering voltage) were applied to study their influence on the metallation yield and on the observed deprotonated and metallated species. Structures of the binary complexes with defined charge locations are proposed, based on the observed in-source fragmentations. It was demonstrated that the in-source fragmentations under hard desolvation conditions could differentiate the Leu/Ile isomers if located at the C-terminal position but not at the N-terminal position. This behavior was also observed using a triple quadrupole analyzer. This facile distinction, due to a different radical loss from the [(M-3Hbond;CO(2))+Cu(II)](-) species (loss of [C(3)H(7)](.) for YGGFL and [C(2)H(5)](.) for YGGFI), was facilitated by the reduction of the oxidation state of Cu(II). This in-source differentiation of YGGFI and YGGFL was also implemented in LC/ESI-MS analysis by post-column addition of the copper salt with a syringe pump.     

Gated photochromism and acidity photomodulation of a diacid dithienylethene dye

The present study quantitatively analyses the gated photochromism and the acidity photomodulation properties of a diacid dithienylethene compound. Photoisomerisation between the open and closed isomers was investigated by UV/visible and (1)H NMR spectroscopy. It was found that the photocyclisation quantum yield of the diacid form was remarkably high (around 90%). Partial neutralisation of the open isomer revealed a gated photochromism as the photocyclisation quantum yield of the mono- and dianion were 50 and 67%, respectively. A considerable photomodulation of the acidity was observed: the closed isomer is more acid than the open one by more than one pK(a) unit. This effect has been shown to be exploitable for a reversible photo-acid generation. This is the first time that a complete quantitative investigation that allows for the determination of the main photochromic, spectral and thermodynamic parameters of a base-sensitive photochromic diarylethene has been carried out.     

Molecular Magnetism and Iron(II) Spin-State Equilibrium as Structural Probes in Heterodinuclear d–f Complexes

Fe(ClO₄)₂ reacts with the segmental ligand 2-{6-[1-(3,5-dimethoxybenzyl)-1H-benzimidazol-2-yl]pyridin-2-yl}-1,1′-dimethyl-5,5′-methylene-2′-(5-methylpyridin-2-yl)bis[1H-benzimidazole] ( L ²) in MeCN to give the diamagnetic deep violet complex [Fe( L ²)₂]²⁺ where the metal is pseudo-octahedrally coordinated by two perpendicular tridentate binding units. When L ² reacts with an equimolar mixture of Ln(ClO₄)₃ (Ln = La, Ce, Pr, Nd, Sm, Eu) and Fe(ClO₄)₂, electrospray-mass spectrometric, spectrophotometric, and ¹H-NMR data in MeCN show the selective formation of the deep red heterodinuclear C₃-cylindrical complexes [LnFe( L ²)₃]⁵⁺ where the three ligands L ² are wrapped about the metal-metal axis. Fe^II occupies the pseudo-octahedral capping site produced by the three bidentate units and Ln^III lies in the resulting ‘facial’ pseudo-tricapped trigonal prismatic site defined by the three remaining tridentate coordinating units. The heterodinuclear complexes [LnFe( L ²)₃]⁵⁺ display spin-state equilibrium (¹A ? ⁵T) and thermochromism in MeCN between 243 and 333 K. Detailed ¹H-NMR, UV/VIS, and magnetic measurements in solution show that the partial spin-crossover behavior of [LnFe( L ²)₃]⁵⁺ occurs for Ln = La? Eu with similar thermodynamic parameters (ΔH_sc = 20–23 kJ·mol^?1 and ΔS_sc = 55–66 J·mol^?1·K^?1) indicating that the size of Ln^III has a negligible influence on the spin-state equilibrium. However, the smaller Ln^III ions have less affinity for the pseudo-tricapped trigonal prismatic coordination site in the heterodinuclear complexes as demonstrated by the partial decomplexation of [YFe( L ²)₃]⁵⁺ to give [Fe( L ²)₂]²⁺ and the absence of the heterodinuclear complex [LuFe( L ²)₃]⁵⁺ under the same conditions. The crucial role played by the sterically demanding Fe^II in the assembly processes is discussed together with the use of the efficient combination of lanthanide probes with magnetic d-block probes for the design and investigation of luminescent and magnetic materials with controlled structural and physical properties. Photophysical measurements reveal that efficient ligand → metal and Eu → Fe energy transfer occur in [EuFe( L ²)₃]⁵⁺ which strongly quench both the ligand and the Eu-centered luminescence.     

The dependence of α-tocopheroxyl radical reduction by hydroxy-2,3-diarylxanthones on structure and micro-environment

The flavonoid quercetin is known to reduce the α-tocopheroxyl radical (˙TocO) and reconstitute α-tocopherol (TocOH). Structurally related polyphenolic compounds, hydroxy-2,3-diarylxanthones (XH), exhibit antioxidant activity which exceeds that of quercetin in biological systems. In the present study repair of ˙TocO by a series of these XH has been evaluated using pulse radiolysis. It has been shown that, among the studied XH, only 2,3-bis(3,4-dihydroxyphenyl)-9H-xanthen-9-one (XH9) reduces ˙TocO, though repair depends strongly on the micro-environment. In cationic cetyltrimethylammonium bromide (CTAB) micelles, 30% of ˙TocO radicals are repaired at a rate constant of ~7.4 × 10(6) M(-1) s(-1) by XH9 compared to 1.7 × 10(7) M(-1) s(-1) by ascorbate. Water-soluble Trolox (TrOH) radicals (˙TrO) are restored by XH9 in CTAB (rate constant ~3 × 10(4) M(-1) s(-1)) but not in neutral TX100 micelles where only 15% of ˙TocO are repaired (rate constant ~4.5 × 10(5) M(-1) s(-1)). In basic aqueous solutions ˙TrO is readily reduced by deprotonated XH9 species leading to ionized XH9 radical species (radical pK(a) ~10). An equilibrium is observed (K = 130) yielding an estimate of 130 mV for the reduction potential of the [˙X9,H(+)/XH9] couple at pH 11, lower than the 250 mV for the [˙TrO,H(+)/TrOH] couple. A comparable value (100 mV) has been determined by cyclic voltammetry measurements.     

Identification of new<Emphasis Type="Italic"> O</Emphasis>-GlcNAc modified proteins using a click-chemistry-based tagging

The O-linked β-N-acetylglucosamine (O-GlcNAc) modification is an abundant post-translational modification in eukaryotic cells. This dynamic glycosylation plays a fundamental role in the activity of many nuclear and cytoplasmic proteins and is associated with pathologies like type II diabetes, Alzheimer’s disease or some cancers. However the exact link between O-GlcNAc-modified proteins and their function in cells is largely undefined for most cases. Here we report a strategy based on the 1,3-dipolar cycloaddition, called click chemistry, between unnatural N-acetylglucosamine (GlcNAc) analogues (substituted with an azido or alkyne group) and the corresponding biotinylated probe to specifically detect, enrich and identify O-GlcNAc-modified proteins. This bio-orthogonal conjugation confirms that only azido analogue of GlcNAc is metabolized by the cell. Thanks to the biotin probe, affinity purification on streptavidin beads allowed us to identify 32 O-GlcNAc-azido-tagged proteins by LC-MS/MS analysis in an MCF-7 cellular model, 14 of which were previously unreported. This work illustrates the use of the click-chemistry-based strategy combined with a proteomic approach to get further insight into the pattern of O-GlcNAc-modified proteins and the biological significance of this post-translational modification. Figure Detection of biotinylated O-GlcNAz proteins in MCF-7 cells Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Caroline Gurcel and Anne-Sophie Vercoutter-Edouart contributed equally to this work.     

Review: Lanthanide coordination chemistry: from old concepts to coordination polymers

Because of their remarkable and unmatched optical and magnetic properties, the lanthanides are under the limelight when it comes to high technology. These elements are used in strategic applications such as optical glasses and lasers, telecommunications, lighting and displays, magnetic materials, hard-disk drives, security inks and counterfeiting tags, catalysis, biosciences, and medicine, to name but a few. Long considered as minor actors in transition metal chemistry, they have now gained respect from coordination chemists who insert them into sophisticated functional and polyfunctional molecules and materials. This mini review focuses on trivalent lanthanide ions and first summarizes their basic properties. Then some classical aspects of their coordination chemistry are discussed, followed by macrocyclic chemistry, supramolecular chemistry, and self-assembly processes. The last part of this contribution deals with coordination polymers and hybrid materials including potential applications.     

Structural and antitumor properties of the YSNSG cyclopeptide derived from tumstatin

We previously demonstrated that the NC1[alpha3(IV)185-191] CNYYSNS peptide inhibited in vivo tumor progression. The YSNS motif formed a beta turn crucial for biological activity. The aim of the present study was to design a YSNSG cyclopeptide with a constrained beta turn on the YSNS residues more stable than CNYYSNS. By nuclear magnetic resonance and molecular modeling, we demonstrated that the YSNSG cyclopeptide actually adopted the expected beta-turn conformation. It promoted melanoma cell adhesion and prevented their adhesion to the native peptide. It inhibited in vitro cell proliferation and migration through Matrigel by downregulating proteolytic cascades. Moreover, intraperitoneal administration of the YSNSG cyclopeptide inhibited melanoma progression far more efficiently than the native peptide. The increased solubility and stability at low pH of the YSNSG cyclopeptide suggest this peptide as a potent antitumor therapeutic agent.