Top–down mass spectrometry reveals new sequence variants of the major bovine seminal plasma protein PDC‐109

The major protein of bovine seminal plasma, PDC‐109, is a 109‐residue polypeptide that exists as a polydisperse aggregate under native conditions. The oligomeric state of this aggregate varies with ionic strength and the presence of lipids. Binding of PDC‐109 to choline phospholipids on the sperm plasma membrane results in an efflux of cholesterol and choline phospholipids, which is an important step in sperm capacitation. In this study, Fourier transform ion cyclotron resonance mass spectrometry was used to analyze PDC‐109 purified from bovine seminal plasma. In addition to the previously known PDC‐109 variants, four new sequence variants were identified by top–down mass spectrometry. For example, a protein variant containing point mutations P10L and G14R was identified along with another form having a 14‐residue truncation in the N‐terminal region. Two other minor variants could also be identified from the affinity‐purified PDC‐109. These results demonstrate that PDC‐109 is naturally produced as a mixture of several protein forms, most of which have not been detected in previous studies. Native mass spectrometry revealed that PDC‐109 is exclusively monomeric at low protein concentrations, suggesting that the protein oligomers are weakly bound and can easily be disrupted. Ligand binding to PDC‐109 was also investigated, and it was observed that two molecules of O‐phosphorylcholine bind to each PDC‐109 monomer, consistent with previous reports. Copyright © 2012 John Wiley & Sons, Ltd.     

Sol-Gel Derived Binder for Inorganic Composites

A new low cost inorganic binder system for large volume products like fiber insulation, building materials, etc. has been developed based on sol-gel technology. The precursor for the binder system is an amorphous mineral raw material containing silica as the major component. The sol was prepared by dissolving the amorphous mineral material in formic acid and the mineral was dissolved in a few hours dependent on the molarity of the formic acid. The sol stability was dependent on the solids content and the pH. The gel formation was studied using light scattering and NMR. The results show a growing particle size of particles mainly consisting of silica while the other cations were dissolved in the pore liquid. During the drying of the wet gels, salts of these cations were crystallized in the pores and further decomposed during heating. The derived binder shows good wetting properties to mineral fiber surfaces and a good strength of paper-binder composites. The new binder system applicable to approximately 800°C has a great potential as a substitute for some traditional organic systems.     

Ultrasound-assisted extraction in the determination of arsenic,cadmium, copper,lead, and silver in contaminated soil samples by inductively coupled plasma atomic emission spectrometry

An extraction method was developed for the determination of toxic elements in contaminated soil samples by inductively coupled plasma atomic emission spectrometry (ICP-AES). The determination of arsenic, cadmium, lead, and silver in ultrasound-assisted extracts of SRM 2710 and SRM 2711 by ICP-AES was carried out with high accuracy and precision (RSD<3.7%). The certified concentrations of the SRMs were obtained for arsenic, cadmium, lead, and silver by using an ultrasound-assisted extraction method with a digestion solution of (1+1)-diluted aqua regia. The determination of copper in SRMs by the ultrasound-assisted extraction method and analysis by ICP-AES failed to obtain the certified concentrations at the 95% level of confidence using (+/-2 s) as confidence limits of the mean. However, the same results were observed with the use of the microwave digestion method and reflux, which is the ISO 11466 standard method. The analysis of the SRMs showed that the ultrasound-assisted extraction method is highly comparable with the other methods used for such purposes. The major advantages of the ultrasound-assisted extraction method compared to the microwave and reflux methods are the high treatment rate (50 samples simultaneously in nine minutes) and low reagent usage, the main benefit of which are the low chloride and nitrate concentrations in the extracts.     

Solid‐State Luminescence of Au?Cu?Alkynyl Complexes Induced by Metallophilicity‐Driven Aggregation

A new series of homoleptic alkynyl complexes, [{Au₂Cu₂(C₂R)₄}_n] (R=C₃H₇O ( 1 ), C₆H₁₁O ( 2 ), C₉H₁₉O ( 3 ), C₁₃H₁₁O ( 4 )), were obtained from Au(SC₄H₈)Cl, Cu(NCMe)₄PF₆, and the corresponding alkyne in the presence of a base (NEt₃). Complexes 1 – 4 aggregate upon crystallization into polymeric chains through extensive metallophilic interactions. The cluster that contains fluorenolyl functionalities, C₁₃H₉O ( 5 ), crystallizes in its molecular form as a disolvate, [Au₂Cu₂(C₂C₁₃H₉O)₄] ? 2 THF. The substitution of weakly bound THF molecules with pyridine molecules leads to the complex [Au₂Cu₂(C₂C₁₃H₉O)₄] ? 2 py ( 6 ), thus giving two polymorphs in the solid state. Such structural diversity is established through metal‐chain and hydrogen‐bond formation, which depends on the stereochemical characteristics of the organic ligands. More interestingly, this solid‐state structural arrangement affords good emission properties, such as intensity and spectroscopic profile, which are otherwise very weakly emissive in solution. Metallophilic aggregation of the {Au₂Cu₂} cluster units, as observed in the crystals, results in dramatic enhancement of the room‐temperature phosphorescence, thereby reaching a maximum quantum efficiency of 95 % ( 4 ). A theoretical approach further indicates a synergistic effect of the array of the metal chain upon aggregation, which greatly enhances the spin‐orbit coupling and, hence, the phosphorescence, thereby opening up a new direction in the field of aggregate‐enhanced emission.     

Zero distribution and division results for exponential polynomials

An exponential polynomial of order q is an entire function of the form

$$g(z) = {P_1}(z){e^{{Q_1}(z)}} + ...{P_k}(z){e^{{Q_k}(z)}},$$

where the coefficients P_j(z),Q_j(z) are polynomials in z such that

$$\max \{ deg({Q_j})\} = q.$$

It is known that the majority of the zeros of a given exponential polynomial are in domains surrounding finitely many critical rays. The shape of these domains is refined by showing that in many cases the domains can approach the critical rays asymptotically. Further, it is known that the zeros of an exponential polynomial are always of bounded multiplicity. A new sufficient condition for the majority of zeros to be simple is found. Finally, a division result for a quotient of two exponential polynomials is proved, generalizing a 1929 result by Ritt in the case q = 1 with constant coefficients. Ritt’s result is closely related to Shapiro’s conjecture that has remained open since 1958.

     

Polymer dynamics in torsion space

The large scale motion of proteins, or covalently bonded polymers in general, is governed by the dynamics of the torsion angles, with bond lengths and bond angles kept approximately constant. In the present work, the Lagrangian equations of torsion motion are derived for a general macromolecule. The dynamics is implemented numerically for a test protein, using the velocity Verlet method as the integrator. The results indicate time steps of up to about 30 fs can be used for short time (up to at least 20 ps) simulations, before the dynamics and energy start to differ significantly from results obtained with smaller time steps. For longer time simulations, up to 1000 ps, a time step of 10 fs is relatively safe. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

Elliptic boundary value problems with Gaussian white noise loads

Linear second order elliptic boundary value problems (BVP) on bounded Lipschitz domains are studied in the case of Gaussian white noise loads. The challenging cases of Neumann and Robin BVPs are considered.The main obstacle for usual variational methods is the irregularity of the load. In particular, the Neumann boundary values are not well-defined.In this work, the BVP is formulated by replacing the continuity of boundary trace mappings with measurability. Instead of variational methods alone, the novel BVP derives also from Cameron–Martin space techniques.The new BVP returns the study of irregular white noise to the study of $L^2$-loads.     

Particle number fractionalization of an atomic Fermi-Dirac gas in an optical lattice

We show that a dilute two-species gas of Fermi-Dirac alkali-metal atoms in a periodic optical lattice may exhibit fractionalization of the particle number when the two components are coupled via a coherent electromagnetic field with a topologically nontrivial phase profile. This results in fractional eigenvalues of the spin operator with vanishing fluctuations. The fractional part can be accurately controlled by modifying the effective detuning of the electromagnetic field.