Designing and reporting on computational experiments with heuristic methods

This article discusses the design of computational experiments to test heuristic methods and provides reporting guidelines for such experimentation. The goal is to promote thoughtful, well-planned, and extensive testing of heuristics, full disclosure of experimental conditions, and integrity in and reproducibility of the reported results.     

Sudden tensile loading of a rubberlike bar

In uniaxial tension, the stress–strain curve for rubber changes curvature from concave to convex as the strain increases. For sudden tensile loading of a bar, a one-dimensional model that reflects this behavior leads to an under-determined problem reminiscent of that arising in materials capable of undergoing phase transitions. In the latter setting, adding the kinetic relation underlying the phase change to the conventional statement of the problem removes the indeterminacy; the same is true when such a relation is used in a formal way in the problem for rubber. This presents a physical question: What is the evolutionary process at the microscale whose kinetics are needed in the dynamics of rubber?     

Transport of Neutrally Buoyant and Dense Variably Sized Colloids in a Two-Dimensional Fracture with Anisotropic Aperture

The transport of monodisperse as well as polydisperse colloid suspensions in a two-dimensional, water saturated fracture with spatially variable and anisotropic aperture is investigated with a particle tracking model. Both neutrally buoyant and dense colloid suspensions are considered. Although flow and transport in fractured subsurface formations have been studied extensively by numerous investigators, the transport of dense, polydisperse colloid suspensions in a fracture with spatially variable and anisotropic aperture has not been previously explored. Simulated snapshots and breakthrough curves of ensemble averages of several realizations of a log-normally distributed aperture field show that polydisperse colloids exhibit greater spreading than monodisperse colloids, and dense colloids show greater retardation than neutrally buoyant colloids. Moreover, it is demonstrated that aperture anisotropy oriented along the flow direction substantially increases colloid spreading; whereas, aperture anisotropy oriented transverse to the flow direction retards colloid movement.     

The Cancer Genetics Network: recruitment results and pilot studies

OBJECTIVE: The National Cancer Institute established the Cancer Genetics Network (CGN) to support collaborative investigations into the genetic basis of cancer susceptibility, explore mechanisms to integrate this new knowledge into medical practice, and identify ways of addressing the associated psychosocial, ethical, legal, and public health issues. SUBJECTS AND METHODS: The CGN has developed the complex infrastructure required to support the projects, including the establishment of guidelines and policies, uniform methods, standard questionnaires to be used by all of the centers, and a standard format for submission of data to the Informatics Center. Cancer patients and their family members have been invited to enroll and be included in a pool of potential study participants. The Information Technology Group is responsible for support of the design, implementation, and maintenance of the multicenter Network-wide research protocols. RESULTS: As of January 2004, the CGN contained data on 23,995 probands (participants) and 425,798 family members. As a resource for cancer genetic studies, the CGN has a large number of probands and first-degree relatives with and without cancer and with multiple ethnicities. Different study designs can be used including case-control, case-case, and family studies. CONCLUSIONS: The unique resources of the CGN are available for studies on cancer genetic susceptibility, translational research, and behavioral research. The CGN is now at a point where approved collaborators may have access to enrolled patients and their families for special studies, as well as to the clinical, environmental and family cancer history data banked in the Informatics Center.     

Syntheses and reactions of some 4,5-dihaloimidazole-2-carboxylic acid derivatives

The preparation of 5H,10H-diimidazo[1,2-a:1′,2′-d]pyrazine-5,10-dione ( 2a ) and its 2,3,7,8-tetrabromo- and 2,3,7,8-tetrachloro- analogs ( 2b and 2c , respectively) is reported. These dimers, when allowed to react with various anilines, afford imidazole-2-carboxamides ( 3a-c ).     

Synthesis and reactivity of a series of [14]azaannulenes

Using a metal template reaction, a series of [14]azaannulenes formed from a β-diketone and an aromatic diamine in the presence of nickel(II) have been synthesized. Attempted cyclizations with bulky β-diketones and certain substituted diamines showed that the cyclization is sensitive to steric effects. At least one of the nickel complexes readily reacts with a series of nucleophilic reagents to give methine-substituted products.     

Total Synthesis of Indole and Dihydroindole Alkaloids. XVIII. Isomers and analogues of vinblastine

The synthesis and conformational analysis of (3′R)-3-hydroxyleurosidine ( 5 ), (3′S)-3-hydroxyleurosidine ( 10 ), (3′S)-3-acetoxy-4′-deoxyleurosidine ( 15 ), (3′R)-3-acetoxy-4′-deoxyleurosidine ( 23 ), (3′R)-3-acetoxy-4′-deoxyvinblastine ( 16 ), (3′S)-3-acetoxy-4′-deoxyleurosidine ( 28 ) is discussed.     

Polymerization in lyotropic liquid crystals. I. Change of structure during polymerization

Polymerization was made at 60°C in a lyotropic liquid crystal of sodium undecenoate and water. The liquid crystalline structure prior to polymerization was identified by optical microscopy and low-angle x-ray diffraction as an array of hexagonal closely packed cylinders with the hydrophobic part of the soap in the center of the cylinders. During polymerization the structure became isotropic at 60°C. Cooling to 20°C transformed the structure to a lamellar liquid crystal–a reversible transition. The structure of the lamellar phase was interpreted as a polyethylene backbone from which deformed decanoate chains reached toward the aqueous layer. Molecular models showed the model to accept head-tail, head-head, and tail-tail configurations in cis and trans conformations with the exception of the cis tail-tail configuration.     

X=Y-ZH systems as potential 1,3-dipoles. The stereochemistry and regiochemistry of cycloaddition reactions of imines of α-amino-acid esters.

The stereochemistry and regiochemistry of cycloadditions of α-amino acid ester imines is dependent both on imine structure and on the reactivity of the dipolarophile. Phenylglycine imines undergo competing dipole stereomutation and cycloaddition with some dipolarophiles.     

Application of Pitzer's equations on the system HCl+MnCl2+H2O at various temperatures. V.

Activity coefficients of hydrochloric acid in mixed solutions of manganous chloride at twelve ionic strengths, from 0.1 to 5.0 mole-kg^–1, were obtained from emf measurements of cells without liquid junction at five temperatures from 5 to 45°C. The data were interpreted in terms of the simple and convenient Pitzer treatment. Activity coefficients for manganous chloride in the mixtures were also derived using Pitzer's equations. Hydrochloric acid follows Harned's rule fromI=0.1 to 3.0 mole-kg^–1, as concluded by Downes, whereas quadratic terms are warranted fromI=3.5 to 5.0 mole-kg^–1. Contrary to Downes' conclusion, Harned's rule clearly does not hold true for manganous chloride at most ionic strengths.