A classical reactive potential for molecular clusters of sulphuric acid and water

We present a two-state empirical valence bond (EVB) potential describing interactions between sulphuric acid and water molecules and designed to model proton transfer between them within a classical dynamical framework. The potential has been developed in order to study the properties of molecular clusters of these species, which are thought to be relevant to atmospheric aerosol nucleation. The particle swarm optimisation method has been used to fit the parameters of the EVB model to density functional theory (DFT) calculations. Features of the parametrised model and DFT data are compared and found to be in satisfactory agreement. In particular, it is found that a single sulphuric acid molecule will donate a proton when clustered with four water molecules at 300 K and that this threshold is temperature dependent.     

Reviewing the use of chitosan and polydopamine for electrochemical sensing

Biopolymers possess highly favorable properties for electrochemical biosensing such as their inherent biocompatibility, inexpensive nature, and strong interfacial adhesion. In this mini-review, we will focus on chitosan and polydopamine, two of the most commonly used biopolymers, for electrochemical sensing applications. Chitosan is a polysaccharide that exhibits high chemical resistance, offers straightforward modification and cross-linking, and possesses antibacterial properties and mucoadhesion. Polydopamine has the benefit of universal adhesion, in addition to the ability to form self-assembled structures. We will demonstrate how the unique structural and electrochemical features of these biopolymers can be used in a range of electrochemical biosensing platforms.     

Combined EXAFS and DFT Structure Calculations Provide Structural Insights into the 1:1 Multi‐Histidine Complexes of CuII,CuI, and ZnII with the Tandem Octarepeats of the Mammalian Prion Protein

The metal‐coordinating properties of the prion protein (PrP) have been the subject of intense focus and debate since the first reports of its interaction with copper just before the turn of the century. The picture of metal coordination to PrP has been improved and refined over the past decade, but structural details of the various metal coordination modes have not been fully elucidated in some cases. In the present study, we have employed X‐ray absorption near‐edge spectroscopy as well as extended X‐ray absorption fine structure (EXAFS) spectroscopy to structurally characterize the dominant 1:1 coordination modes for Cu^II, Cu^I, and Zn^II with an N‐terminal fragment of PrP. The PrP fragment corresponds to four tandem repeats representative of the mammalian octarepeat domain, designated as OR₄, which is also the most studied PrP fragment for metal interactions, making our findings applicable to a large body of previous work. Density functional theory (DFT) calculations have provided additional structural and thermodynamic data, and candidate structures have been used to inform EXAFS data analysis. The optimized geometries from DFT calculations have been used to identify potential coordination complexes for multi‐histidine coordination of Cu^II, Cu^I, and Zn^II in an aqueous medium, modelled using 4‐methylimidazole to represent the histidine side chain. Through a combination of in silico coordination chemistry as well as rigorous EXAFS curve‐fitting, using full multiple scattering on candidate structures derived from DFT calculations, we have characterized the predominant coordination modes for the 1:1 complexes of Cu^II, Cu^I, and Zn^II with the OR₄ peptide at pH 7.4 at atomic resolution, which are best represented as square‐planar [Cu^II(His)₄]²⁺, digonal [Cu^I(His)₂]⁺, and tetrahedral [Zn^II(His)₃(OH₂)]²⁺, respectively.     

A two-step,single pot procedure for the synthesis of substituted dihydropyrazolo-pyrimidines

In this study, we report a two-step, one pot tandem microwave-assisted reaction of 3-formylchromones with aminopyrazoles followed by a tin-free radical addition. A library of alkyl substituted dihydropyrazolopyrimidines was prepared using this new process.     

Interaction of a C-F bond with the π-system of a C═C bond or "head on" with a proximate C-H bond

We describe the synthesis and preliminary study of two molecules, in which a fluorine atom is positioned proximately above the π-orbitals of a C═C bond or else wherein a C-F bond interacts in a "head on" fashion with a proximate C-H bond. The spectroscopic characteristics of these unusual interactions are documented, X-ray crystallographic analyses are reported, and theoretical calculations are employed to support the observed spectroscopy.     

Structure, electronic properties and catalytic behaviour of an activity-enhancing CYP102A1 (P450(BM3)) variant

The substrate-free crystal structure of a five-mutation directed evolution variant of CYP102A1 (P450(BM3)) with generic activity-enhancing properties ("KT2") has been determined to 1.9-? resolution. There is a close resemblance to substrate-bound structures of the wild-type enzyme (WT). The disruption of two salt bridges that link the G- and I-helices in WT causes conformational changes that break several hydrogen bonds and reduce the angle of the kink in the I-helix where dioxygen activation is thought to take place. The side-chain of a key active site residue, Phe87, is rotated in one molecule of the asymmetric unit, and the side-chains of Phe158 and Phe261 cascade into the orientations found in fatty-acid-bound forms of the enzyme. The iron is out of the porphyrin plane, towards the proximal cysteine. Unusually, the axial water ligand to the haem iron is not hydrogen-bonded to Ala264. The first electron transfer from the reductase domain to the haem domain of substrate-free KT2 is almost as fast as in palmitate-bound WT even though the reduction potential of the haem domain is only slightly more oxidising than that of substrate-free WT. However, NADPH is turned over slowly in the absence of substrate, so the catalytic cycle is gated by a step subsequent to the first electron transfer-a contrast to WT. Propylbenzene binding slightly raises the first electron transfer rate in WT but not in KT2. It is proposed that the generic rate accelerating properties of KT2 arise from the substrate-free form being in a catalytically ready conformation, such that substrate-induced changes to the structure play a less significant role in promoting the first electron transfer than in WT.     

Synthesis of trans-Mono(silyl)palladium(II) Bromide Complexes

The stoichiometric reaction of cis-[Pd(ITMe)₂(SiR₃)₂], where (SiR₃ = SiMe₃ and SiMe₂Ph and ITMe = 1,3,4,5-tetramethylimidazol-2-ylidene) with allyl bromide affords the corresponding allylsilanes along with complexes of the type trans-[Pd(ITMe)₂(SiR₃)(Br)]. The structure of trans-[Pd(ITMe)₂(SiMe₂Ph)Br] 2b has been determined in the solid state and displays a slightly distorted square-planar geometry with the two N-heterocyclic carbene ligands in a trans-configuration.     

Symplectic Cohomology and q-Intersection Numbers

Given a symplectic cohomology class of degree 1, we define the notion of an ??equivariant" Lagrangian submanifold (this roughly corresponds to equivariant coherent sheaves under mirror symmetry). The Floer cohomology of equivariant Lagrangian submanifolds has a natural endomorphism, which induces an ${\mathbb{R}}$ -grading by generalized eigenspaces. Taking Euler characteristics with respect to the induced grading yields a deformation of the intersection number. Dehn twists act naturally on equivariant Lagrangians. Cotangent bundles and Lefschetz fibrations give fully computable examples. A key step in computations is to impose the ??dilation" condition stipulating that the BV operator applied to the symplectic cohomology class gives the identity.     

The elixir of life: using a maintenance, repair and replacement model based on virtual and operating age in the water industry

Processing equipment in the water industry is subject to decayand requires maintenance, repair and eventual replacement. Thechallenge of competition within the water industry and the accompanyingregulatory regime requires that actions be integrated and costeffective. This is an industry, which has considerable dataon the failure of its equipment, but until recently very fewmodels of the maintenance process have been built. This paper describes the context of this problem for cleanwater processing where the equipment is that required to purifywater. It proposes a model based on the virtual and operatingage of the components. The operating age reflects the true ageof the equipment while the virtual age allows for the cumulativeeffect of maintenance actions performed on the equipment. Themodel also allows for different types of equipment by describingdegradation by Cox's proportional hazards model. Thus the specialfeatures of the equipment and environment in which the equipmentoperates are described by a set of characteristics, which modifythe hazard rate of the failure time of the equipment. This approachusing Cox's model with virtual and operating age can be appliedto other processing industries including the gas industry andthe ‘dirty water’ side of the water industry. The model is formulated as a stochastic dynamic programmingor Markov decision process and the form of the optimal policyis determined. This shows that repair and replacement shouldonly be performed when the equipment has failed and describesgeneral conditions when replacement is appropriate. The optimalpolicy is calculated numerically using the value iteration algorithmfor a specific example based on data on failure.