Rapid synthesis of α-ketoamides using microwave irradiation-simultaneous cooling method

Microwave-assisted acyl chloride-isonitrile condensation and CaCO₃-mediated hydrolysis constitute a one-pot, 2-minute process to prepare α-ketoamides.     

A polymorphic pocket at the P10 position contributes to peptide binding specificity in class II MHC proteins

Peptides bind to class II major histocompatibility complex (MHC) proteins in an extended conformation. Pockets in the peptide binding site spaced to accommodate peptide side chains at the P1, P4, P6, and P9 positions have been previously characterized and help to explain the obtained peptide binding specificity. However, two peptides differing only at P10 have significantly different binding affinities for HLA-DR1. The structure of HLA-DR1 in complex with the tighter binding peptide shows that the peptide binds in the usual polyproline type II conformation, but with the P10 residue accommodated in a shallow pocket at the end of the binding groove. HLA-DR1 variants with polymorphic residues at these positions were produced and found to exhibit different side chain specificity at the P10 position. These results define a new specificity position in HLA-DR proteins.     

Biomimetic cycloaddition approach to tropolone natural products via a tropolone ortho-quinone methide

[reaction: see text] A study toward a possible biomimetic hetero Diels-Alder reaction is reported between humulene and a novel tropolone ortho-quinone methide. A suitable tropolone ortho-quinone methide precursor has been prepared from 3-methyl-2-furoate. Heating the ortho-quinone methide precursor gave a tropolone ortho-quinone methide, which in the presence of humulene underwent a hetero Diels-Alder reaction to give a deoxy analogue of epolone B.     

Gene expression analysis for high throughput screening applications

To meet growing needs for high throughput gene expression profiling, we established a new automated high throughput TaqMan RT-PCR method for quantitative mRNA expression analysis. In this method, the Allegro( trade mark ) (Zymark) system conducts all sample tracking and liquid handling steps, and ABI PRISM 7900 HT (Applied Biosystems) is used to conduct real-time determination of the C(t) value when amplification of PCR products is first detected and accumulation of inhibitory PCR products is unlikely to occur. The ABI PRISM 7900 HT Sequence Detection System features a real-time PCR instrument with 384-well-plate compatibility and robotic loading, and continuous wavelength detection, which enables the use of multiple fluorophores in a single reaction. The Allegro System offers an assembly line approach with a modular design that allows reconfiguration of the components to accommodate variations in the assay flow. In the present study, we have established and validated a new automated High Throughput (HT) TaqMan RT-PCR- based method for quantitative mRNA expression analysis. The data demonstrate that HT-Taqman PCR is a powerful tool that can be used for measuring low concentrations of mRNA, and is highly accurate, reproducible, and amenable to high throughput analysis. Results suggest that HT-TaqMan is a reliable method for the quantification of low-expression genes and a powerful tool with HT capability for target identification/validation, structure-activity relationship (SAR) study, compound selection for efficacy studies, and biomarker identification in drug discovery and development.     

Ion spray-tandem mass spectrometry of supramolecular coordination complexes

Double-helical [M₂L₂] ⁿ⁺, triple-helical [M₂L₃] ⁿ⁺, and toroidal [M₃L₃] ⁿ⁺ (M = Cu, Co, Fe, Ni, La, Eu, Gd, Tb, or Lu) supramolecular complexes have been fully characterized by ion spray mass spectrometry (IS-MS). The IS-MS spectra from pure acetonitrile solutions reflect the nature of the cations present in solution with conservation of the charge state and allow an efficient qualitative speciation of the compounds. The mass spectrometry results can be correlated with other powerful techniques (nuclear magnetic resonance and electronic spectroscopy) for the characterization of supramolecular complexes in solution, Structural information is obtained by collision-induced dissociation, which strongly depends on the metal ions used in the supramolecular complexes and on the various connectivities and topologies of the ligands. When the ligand contains 3,5dimethoxybenzyl groups bound to the benzimidazole rings, the partial fragmentation of the complexes is associated with a decrease of the total charge of the complexes and the appearance of the characteristic fragment at m/z 151 that corresponds to the 3,5-dimethoxybenzyl cation. A detailed analysis of the fragmentation pathways of these supramolecular complexes suggests that the metal-nitrogen coordination bonds are very strong in the gas phase.     

New rhenium-tin cluster adds palladium phosphine groups across Re-Sn bonds

The new rhenium-tin complex Re2(CO)8(mu-SnPh2)2, 1 was obtained in 52% yield from the reaction of Re2(CO)8(mu-H)[mu-C(H)C(H)Bu] with Ph3SnH. Compound 1 contains two SnPh2 groups bridging a long Re-Re single bond, Re-Re = 3.1971(4) A [3.1902(4) A], Re-Sn = 2.7429(4) A [2.7445(4) A], and 2.7675(4) [2.7682(5) A]. A bis-Pd(PBut3) adduct of 1, Pd2Re2(CO)8(mu-SnPh2)2(PBut3)2, 2 was obtained from the reaction of 1 with Pd(PBut3)2. Compound 2 contains Pd(PBut3) groups bridging two of its four Re-Sn bonds. The Re-Re bond and the unbridged Re-Sn bonds in 2 are significantly longer than those in 1, 3.245(1) A and 2.8167(14) A, respectively. Fenske-Hall molecular orbital calculations on 1 and 2 have been performed to explain the metal-metal bonding in these unusual mixed-metal polynuclear metal complexes.     

High-nuclearity iridium carbonyl clusters containing phenylgermyl ligands: synthesis, structures, and reactivity

The reaction of Ir4(CO)12 with Ph3GeH at 97 degrees C has yielded the new tetrairidium cluster complexes Ir4(CO)7(GePh3)(mu-GePh2)2[mu3-eta3-GePh(C6H4)](mu-H)2 (10) and Ir4(CO)8(GePh3)2(mu-GePh2)4 (11). The structure of 10 consists of a tetrahedral Ir4 cluster with seven terminal CO groups, two bridging GePh2) ligands, an ortho-metallated bridging mu3-eta3-GePh(C6H4) group, a terminal GePh3 ligand, and two bridging hydrido ligands. Compound 11 consists of a planar butterfly arrangement of four iridium atoms with four bridging GePh2 and two terminal GePh3 ligands. The same reaction at 125 degrees C yielded the two new triiridium clusters Ir3(CO)5(GePh3)(mu-GePh2)3(mu3-GePh)(mu-H) (12) and Ir3(CO)6(GePh3)3(mu-GePh2)3 (13). Compound 12 contains a triangular Ir3 cluster with three bridging GePh2), one triply bridging GePh, and one terminal GePh3 ligand. The compound also contains a hydrido ligand that bridges one of the Ir-Ge bonds. Compound 13 contains a triangular Ir3 cluster with three bridging GePh2 and three terminal GePh3 ligands. At 151 degrees C, an additional complex, Ir4H4(CO)4(mu-GePh2)4(mu4-GePh)2 (14), was isolated. Compound 14 consists of an Ir4 square with four bridging GePh2, two quadruply bridging GePh groups, and four terminal hydrido ligands. Compound 12 reacts with CO at 125 degrees C to give the compound Ir3(CO)6(mu-GePh2)3(mu3-GePh) (15). Compound 15 is formed via the loss of the hydrido ligand and the terminal GePh3 ligand and the addition of one carbonyl ligand to 12. All compounds were fully characterized by IR, NMR, single-crystal X-ray diffraction analysis, and elemental analysis.     

The resolution of racemic 2-alkyl-1-aminocyclopropane-1-carboxylic acids

Practical procedures for the resolution of racemic modification of (1$\text{R}$, 2$\text{S}$)-and (1$\text{S}$, 2$\text{R}$)-1-amino-2-ethylcyclopropane-1-carboxylic acid $\text{1a}$,$\text{b}$,(1$\text{R}$, 2$\text{S}$)- and (1$\text{S}$, 2$\text{R}$)-1-amino-2-methylcyclopropane-1-carboxylic acid $\text{2a}$,$\text{b}$, and (1$\text{R}$, 2$\text{R}$)- and (1$\text{S}$, 2$\text{S}$)-1-amino-2-methylcyclopropane-1-carboxylic acid $\text{3a}$,$\text{b}$ are described; the structures as $\text{1a}$,$\text{2a}$, and $\text{3a}$ were confirmed by X-ray-crystallographic methods.     

Calculated electronic spectra of model ferric cytochrome P450 complexes

Restricted open-shell ground state properties and electronic spectra of two closely related low-spin, ferric, 6-coordinate, model cytochrome P450 complexes, one with a methyl mercaptide and the other a mercaptan as the second axial ligands, have been calculated with a newly modified, semiempirical INDO-SCF-CI method. The sensitivity of the calculated spectra to protonation of the sixth axial ligand, and the ability of the method to predict characteristic spectral features for the complexes investigated, are determined. Assignment of transitions, including xy- and z-polarized transitions, are made and compared with experimental observations where available. In particular, the origin of the anomalous split Soret spectrum observed in low-spin ferric complexes with mercaptide but not a mercaptan is investigated. Finally, a two part hypothesis is presented which provides a general explanation for the origin of both the observed split Soret and the red-shifted normal Soret in various ferrous and ferric P450 complexes in terms of the ground state orbital characters and simple symmetry considerations.     

Rate constants for the gas-phase reactions of OH radicals and Cl atoms with n-alkyl nitrites at atmospheric pressure and 298 K

Rate constants for the reactions of OH radicals and Cl atoms with CH₃ONO, C₂H₅ONO, n-C₃H₇ONO, n-C₄H₉ONO, and n-C₅H₁₁ONO have been determined at 298 ± 2 K and a total pressure of approximately 1 atm. The OH rate data were obtained using both the absolute rate technique of pulse radiolysis combined with kinetic spectroscopy and a relative rate method involving simultaneous measurement of the loss of the nitrite and the reference compound. The Cl rate constants were measured using the relative rate method. Values of the rate constants in units of 10^?13 cm³ molecule^?1 s^?1 are: