A general method to determine ionization constants of responsive polymer thin films

A general method has been developed to determine the ionization constants of polymer thin films based on the stimuli-responsiveness of the polymer. Robust polymer films were fabricated on silicon wafers and gold slides using perfluorophenyl azide (PFPA) as the coupling agent. The ionization constants were measured by a number of techniques including ellipsometry, dynamic contact angle goniometry, and surface plasmon resonance imaging (SPRi). Using poly(4-vinylpyridine) (P4VP) as the model system, P4VP thin films were fabricated and the ionization constants of the films were measured taking advantage of the pH responsive property of the polymer. The pK(a) determined by ellipsometry, ~4.0, reflects the swelling of the polymer film in response to pH. The pK(a) value calculated from the dynamic contact angle measurements, ~5.0, relies on the change in hydrophilicity/hydrophobicity of the films as the polymer undergoes protonation/deprotonation. The pK(a) value measured by SPRi, ~4.9, monitors in situ the change of refractive index of the polymer thin film as it swells upon protonation. This was the first example where SPRi was used to measure the ionization constants of polymers.     

Carboxyalkyl peptoid PNAs: synthesis and hybridization properties

N^γ-Carboxyalkyl modified peptide nucleic acids (PNAs), containing the four canonical nucleobases, were prepared via solid-phase oligomerization. The inserted peptoid monomers 1 and 2 were constructed through simple synthetic procedures, utilizing appropriate glycidol and iodoalkyl electrophiles. Thermal denaturation studies, performed with complementary antiparallel DNA strands, demonstrated that the length of the N^γ-side chain strongly influences the modified PNAs hybridization properties. Moreover, multiple negative charges on the oligoamide backbone, when present on γ-nitrogen C₆ side chains proved to be beneficial for the oligomers’ water solubility and DNA hybridization specificity.     

Effect of the Substituents of the Neighboring Ring in the Conformational Equilibrium of Iduronate in Heparin‐like Trisaccharides

Based on the structure of the regular heparin, we have prepared a smart library of heparin‐like trisaccharides by incorporating some sulfate groups in the sequence α‐D ‐GlcNS‐ (1‐4)‐α‐L ‐Ido2S‐(1‐4)‐α‐D ‐GlcN. According to the 3D structure of heparin, which features one helix turn every four residues, this fragment corresponds to the minimum binding motif. We have performed a complete NMR study and found that the trisaccharides have a similar 3D structure to regular heparin itself, but their spectral properties are such that allow to extract very detailed information about distances and coupling constants as they are isotropic molecules. The characteristic conformational equilibrium of the central iduronate ring has been analyzed combining NMR and molecular dynamics and the populations of the conformers of the central iduronate ring have been calculated. We have found that in those compounds lacking the sulfate group at position 6 of the reducing end glucosamine, the population of ²S₀ of the central iduronate residue is sensitive to the temperature decreasing to 19 % at 278 K. On the contrary, the trisaccharides with 6‐O‐sulfate in the reducing end glucosamine keep the level of population constant with temperature circa 40 % of ²S₀ similar to that observed at room temperature. Another structural feature that has been revealed through this analysis is the larger flexibility of the L ‐IdoAS‐ D ‐GlcN glycosidic linkage, compared with the D ‐GlcNS‐L ‐IdoA. We propose that this is the point where the heparin chain is bended to form structures far from the regular helix known as kink that have been proposed to play an important role in the specificity of the heparin–protein interaction.     

Surface Defects Activating New Reaction Paths: Formation of Formate during Methanol Oxidation on Ru(0001)

Methanol was co‐adsorbed with oxygen on Ru(0001) under conditions approaching those of real catalysts: at room temperature and at relatively high pressures and exposures, together with a comparative analysis of flat and defective surfaces. To clarify reaction routes, parallel exposures to formaldehyde and oxygen have also been analyzed. It is found that for both mixtures of gases, a new reaction path is activated on defective surfaces, in which methanol is oxidized to formate. Furthermore, at variance with pure methanol adsorption, apart from CO, various intermediates are observed in both flat and defective surfaces. On flat surfaces, formaldehyde and formyl are recognized whereas on defective ones methoxy and formate are detected. A model involving steering effects is presented, which accounts for the activity of surface defects towards the synthesis of formate.     

Solid-phase-assisted synthesis of targeting peptide-PEG-oligo(ethane amino)amides for receptor-mediated gene delivery

In the forthcoming era of cancer gene therapy, efforts will be devoted to the development of new efficient and non-toxic gene delivery vectors. In this regard, the use of Fmoc/Boc-protected oligo(ethane amino)acids as building blocks for solid-phase-supported assembly represents a novel promising approach towards fully controlled syntheses of effective gene vectors. Here we report on the synthesis of defined polymers containing the following: (i) a plasmid DNA (pDNA) binding domain of eight succinoyl-tetraethylenpentamine (Stp) units and two terminal cysteine residues; (ii) a central polyethylene glycol (PEG) chain (with twenty-four oxyethylene units) for shielding; and (iii) specific peptides for targeting towards cancer cells. Peptides B6 and c(RGDfK), which bind transferrin receptor and α(v)β(3) integrin, respectively, were chosen because of the high expression of these receptors in many tumoral cells. This study shows the feasibility of designing these kinds of fully controlled vectors and their success for targeted pDNA-based gene transfer.     

Inclusion controlled lanthanide-imidazolium functionalised carboxylate complexation

Imidazolium functionalized carboxylic acid forms a multi-component material with p-sulfonatocalix[4]arene and aquated lanthanide ions, stabilising dinuclear metal complexes for Y(3+) and Gd(3+). These have the simplest binding of two bridging carboxylates between the two metal centres (Y(3+)), or the same arrangement along with the simplest binding of one carboxylate bridging two metal ions for the larger metal ion (Gd(3+)).     

Photocatalytic water oxidation: tuning light-induced electron transfer by molecular Co4O4 cores

Isostructural cubane-shaped catalysts [Co(III)(4)(μ-O)(4)(μ-CH(3)COO)(4)(p-NC(5)H(4)X)(4)], 1-X (X = H, Me, t-Bu, OMe, Br, COOMe, CN), enable water oxidation under dark and illuminated conditions, where the primary step of photoinduced electron transfer obeys to Hammett linear free energy relationship behavior. Ligand design and catalyst optimization are instrumental for sustained O(2) productivity with quantum efficiency up to 80% at λ > 400 nm, thus opening a new perspective for in vitro molecular photosynthesis.     

α-Glycosylation by D-glucosamine-derived donors: synthesis of heparosan and heparin analogues that interact with mycobacterial heparin-binding hemagglutinin

Numerous biomolecules possess α-D-glucosamine as structural component. However, chemical glycosylations aimed at this backbone are usually not easily attained without generating the unwanted β-isomer. We report herein a versatile approach in affording full α-stereoselectivity built upon a carefully selected set of orthogonal protecting groups on a D-glucosaminyl donor. The excellent stereoselectivity provided by the protecting group combination was found independent of leaving groups and activators. With the trichloroacetimidate as the optimum donor leaving group, core skeletons of glycosylphosphatidyl inositol anchors, heparosan, heparan sulfate, and heparin were efficiently assembled. The orthogonal protecting groups were successfully manipulated to further carry out the total syntheses of heparosan tri- and pentasaccharides and heparin di-, tetra-, hexa-, and octasaccharide analogues. Using the heparin analogues, heparin-binding hemagglutinin, a virulence factor of Mycobacterium tuberculosis, was found to bind at least six sugar units with the interaction notably being entropically driven.     

On the unique representation of very strong algebraic geometry codes

This paper addresses the question of retrieving the triple ${(\mathcal X,\mathcal P, E)}$ from the algebraic geometry code ${\mathcal C = \mathcal C_L(\mathcal X, \mathcal P, E)}$ , where ${\mathcal X}$ is an algebraic curve over the finite field ${\mathbb F_q, \,\mathcal P}$ is an n-tuple of ${\mathbb F_q}$ -rational points on ${\mathcal X}$ and E is a divisor on ${\mathcal X}$ . If ${\deg(E)\geq 2g+1}$ where g is the genus of ${\mathcal X}$ , then there is an embedding of ${\mathcal X}$ onto ${\mathcal Y}$ in the projective space of the linear series of the divisor E. Moreover, if ${\deg(E)\geq 2g+2}$ , then ${I(\mathcal Y)}$ , the vanishing ideal of ${\mathcal Y}$ , is generated by ${I_2(\mathcal Y)}$ , the homogeneous elements of degree two in ${I(\mathcal Y)}$ . If ${n >2 \deg(E)}$ , then ${I_2(\mathcal Y)=I_2(\mathcal Q)}$ , where ${\mathcal Q}$ is the image of ${\mathcal P}$ under the map from ${\mathcal X}$ to ${\mathcal Y}$ . These three results imply that, if ${2g+2\leq m < \frac{1}{2}n}$ , an AG representation ${(\mathcal Y, \mathcal Q, F)}$ of the code ${\mathcal C}$ can be obtained just using a generator matrix of ${\mathcal C}$ where ${\mathcal Y}$ is a normal curve in ${\mathbb{P}^{m-g}}$ which is the intersection of quadrics. This fact gives us some clues for breaking McEliece cryptosystem based on AG codes provided that we have an efficient procedure for computing and decoding the representation obtained.