Structural control in thin layers of poly(p-phenyleneethynylene)s: photophysical studies of Langmuir and Langmuir-Blodgett films

We present the relationship between the spatial arrangement and the photophysical properties of fluorescent polymers in thin films with controlled structures. Eight surfactant poly(p-phenyleneethynylene)s were designed and studied. These detailed studies of the behavior of the polymers at the air-water interface, and of the photophysical properties of their transferred LB films, revealed key structure-property relationships. Some of the polymers displayed pi-aggregates that are characteristic of an edge-on structure at the air-water interface. Monolayer LB films of these polymers showed greatly reduced quantum yields relative to solution values. Other polymers exhibited a highly emissive face-on structure at the air-water interface, and did not form pi-aggregates. The combination of pressure-area isotherms and the surface pressure dependent in situ UV-vis spectra of the polymers at the air-water interface revealed different behavioral details. In addition, the UV-vis spectra, fluorescence spectra, and quantum yields of the LB films provide design principles for making highly emissive films.     

Application of associative neural networks for prediction of lipophilicity in ALOGPS 2.1 program

This article provides a systematic study of several important parameters of the Associative Neural Network (ASNN), such as the number of networks in the ensemble, distance measures, neighbor functions, selection of smoothing parameters, and strategies for the user-training feature of the algorithm. The performance of the different methods is assessed with several training/test sets used to predict lipophilicity of chemical compounds. The Spearman rank-order correlation coefficient and Parzen-window regression methods provide the best performance of the algorithm. If additional user data is available, an improved prediction of lipophilicity of chemicals up to 2-5 times can be calculated when the appropriate smoothing parameters for the neural network are selected. The detected best combinations of parameters and strategies are implemented in the ALOGPS 2.1 program that is publicly available at http://www.vcclab.org/lab/alogps.     

Morphology-controlled nonaqueous synthesis of anisotropic lanthanum hydroxide nanoparticles

The preparation of lanthanum hydroxide and manganese oxide nanoparticles is presented, based on a nonaqueous sol-gel process involving the reaction of La(OiPr)₃ and KMnO₄ with organic solvents such as benzyl alcohol, 2-butanone and a 1:1 vol. mixture thereof. The lanthanum manganese oxide system is highly complex and surprising results with respect to product composition and morphology were obtained. In dependence of the reaction parameters, the La(OH)₃ nanoparticles undergo a shape transformation from short nanorods with an average aspect ratio of 2.1 to micron-sized nanofibers (average aspect ratio is more than 59.5). Although not directly involved, KMnO₄ plays a crucial role in determining the particle morphology of La(OH)₃. The reason lies in the fact that KMnO₄ is able to oxidize the benzyl alcohol to benzoic acid, which presumably induces the anisotropic particle growth in [0 0 1] direction upon preferential coordination to the ±(1 0 0), ±(0 1 0) and ±(−110) crystal facets. By adjusting the molar La(OiPr)₃-to-KMnO₄ ratio as well as by using the appropriate solvent mixture it is possible to tailor the morphology, phase purity and microstructure of the La(OH)₃ nanoparticles. Postsynthetic thermal treatment of the sample containing La(OH)₃ nanofibers and β-MnOOH nanoparticles at the temperature of 800 °C for 8 h yielded polyhedral LaMnO₃ and worm-like La₂O₃ nanoparticles as final products.     

Mass spectrometric identification of cyclic polysulfides in sediment of the Eastern Gulf of Finland. I

Structures of six cyclic polysulfides, previously unknown as organic environmental pollutants, were analyzed from a sediment sample from the Eastern Gulf of Finland. The determinations were done by gas chromatography connected to mass spectrometry. High resolution (HRMS) measurements of the isotopic composition of four compounds could be done to confirm their molecular formulae. Total low resolution (LRMS) spectra were used to elucidate structures of all six compounds by thermochemical approach, application of fragmentation rules and by ICLU simulation of the spectra. The compounds were deduced to be (in the order of GC- retention) 1,2,4-trithiacycloheptane, tetrathiacyclopentane, 1,2,4,5-tetrathia-cyclohexane, 1,2,3,4- tetrathiacycloheptane, 1,2,3,4-tetrathiacyclohexane and 1,2,4,6-tetrathiacyclooctane.     

Understanding the factors controlling the photo-oxidation of natural DNA by enantiomerically pure intercalating ruthenium polypyridyl complexes through TA/TRIR studies with polydeoxynucleotides and mixed sequence oligodeoxynucleotides

Ruthenium polypyridyl complexes which can sensitise the photo-oxidation of nucleic acids and other biological molecules show potential for photo-therapeutic applications. In this article a combination of transient visible absorption (TrA) and time-resolved infra-red (TRIR) spectroscopy are used to compare the photo-oxidation of guanine by the enantiomers of [Ru(TAP)₂(dppz)]²⁺ in both polymeric {poly(dG-dC), poly(dA-dT) and natural DNA} and small mixed-sequence duplex-forming oligodeoxynucleotides. The products of electron transfer are readily monitored by the appearance of a characteristic TRIR band centred at ca. 1700 cm⁻¹ for the guanine radical cation and a band centered at ca. 515 nm in the TrA for the reduced ruthenium complex. It is found that efficient electron transfer requires that the complex be intercalated at a G-C base-pair containing site. Significantly, changes in the nucleobase vibrations of the TRIR spectra induced by the bound excited state before electron transfer takes place are used to identify preferred intercalation sites in mixed-sequence oligodeoxynucleotides and natural DNA. Interestingly, with natural DNA, while it is found that quenching is inefficient in the picosecond range, a slower electron transfer process occurs, which is not found with the mixed-sequence duplex-forming oligodeoxynucleotides studied.

Efficient electron transfer requires the complex to be intercalated at a G-C base-pair. Identification of preferred intercalation sites is achieved by TRIR monitoring of the nucleobase vibrations before electron transfer.     

Photolysis of 5-diazo-2,2-dimethyl-4,6-dioxo-1,3-dioxane (diazoisopropylidenemalonic acid)

The principal pathway in the photochemical ( > 210 nm) transformation of 5-diazo-2,2-dimethyl-4,6-dioxo-1,3-dioxane in an aqueous medium (or in methanol) is splitting out of nitrogen and the Wolff rearrangement to give the stable 2,2-dimethyl-5-oxo-1,3-dioxolane-4-carboxylic acid (or its methyl ester), which undergoes decarboxylation only at temperatures above 150 ° C, whereas it undergoes hydrolysis to a hydroxymalonic acid in the presence of trifluoroacetic acid.Communication 6 from the series Chemistry of diazo dicarbonyl compounds. See [1] for Communication 5.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 321–325, March, 1985.     

New redox system: Trichloromethylarene —pyridine base

A redox reaction of trichloromethylarenes with pyridines results in respective N-(-chloroarylmethyl)substituted pyridiniurn chlorides which give, on hydrolysis, aromatic aidehydes and 4-chloropyridines or 1, 4-bipyridiniurn salts.N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 117913 Moscow, Russia. Published in Khimiya Geterotsiklicheskikh Soedinenii, No. 10, pp. 1373–1375, October, 1995. Original article submitted September 5, 1995.     

Amperometric urea biosensor based on urease and electropolymerized toluidine blue dye as a pH-sensitive redox probe

The electropolymerized toluidine blue film deposited on the glassy carbon electrode show amperometrically detectable pH sensitivity. This feature of polytoluidine blue (PTOB) film was used for a construction of an amperometric urea biosensor. We have observed a linear shift of the formal redox potential with increasing pH value between 4 and 8 giving the slope of 81 mV(Delta) pH(-1). Polytoluidine blue film has had a significantly increased stability and higher electrochemical activity compared to the adsorbed monomeric dye. The polytoluidine blue urea biosensor has been operating at a working potential of -200 mV vs. SCE. The sensitivity of the biosensor was 980 nA mM(-1) cm(-2). The biosensor showed linearity in concentration range up to 0.8 mM with the detection limit of 0.02 mM (S/N=3).     

Transfection mediated by gemini surfactants: engineered escape from the endosomal compartment

The structure of the lipoplex formed from DNA and the sugar-based cationic gemini surfactant 1, which exhibits excellent transfection efficiency, has been investigated in the pH range 8.8-3.0 utilizing small-angle X-ray scattering (SAXS) and cryo-electron microscopy (cryo-TEM). Uniquely, three well-defined morphologies of the lipoplex were observed upon gradual acidification: a lamellar phase, a condensed lamellar phase, and an inverted hexagonal (H(II)) columnar phase. Using molecular modeling, we link the observed lipoplex morphologies and physical behavior to specific structural features in the individual surfactant, illuminating key factors in future surfactant design, viz., a spacer of six methylene groups, the presence of two nitrogens that can be protonated in the physiological pH range, two unsaturated alkyl tails, and hydrophilic sugar headgroups. Assuming that the mechanism of transfection by synthetic cationic surfactants involves endocytosis, we contend that the efficacy of gemini surfactant 1 as a gene delivery vehicle can be explained by the unprecedented observation of a pH-induced formation of the inverted hexagonal phase of the lipoplex in the endosomal pH range. This change in morphology leads to destabilization of the endosome through fusion of the lipoplex with the endosomal wall, resulting in release of DNA into the cytoplasm.     

Synthesis of bacterial antigenic polysaccharides and their fragments V. Use of 1,2-o-isopropylidene-4,6-O-ethylidene-α-D-galactopyranose for the synthesis of oligosaccharides with 3-o-substituted galactopyranose residue

Conclusions Trisaccharide-D-glucopyranosyl-(14)--L-rhamnopyranosyl-(1 3)-D-galactose was synthesized by using, 2-O-isopropylidene-4,6-O-ethylidene--D-galactopyranose for producing 1 3-rhamnosylgalactose, linkage.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 7, pp. 1609–1613, July, 1977.