On the protonated state of amidinium-like diaromatic derivatives: X-ray and UV studies

We present the crystal structures of the chloride salts of the mono-guanidinium 1 (–CH₂CH₂– linker) and the bis-isouronium 2 (–O– linker) that have been resolved by us indicating that these compounds are diprotonated in the solid state as informed by the counterions positions. To determine the pK _a values of these compounds as well as those of their analogues 3 (mono-2-aminoimidazolinium with a –CH₂CH₂– linker) and 4 (mono-guanidinium with a –O– linker), the corresponding UV–Vis titrations were carried out. Thus, in aqueous solution compounds 1, 3 and 4 were present as mono-cationic species while derivative 2 was a bis-cation.     

Syntheses and modifications of bisdiazonium salts of 3,8-benzo[c]cinnoline and 3,8-benzo[c]cinnoline 5-oxide onto glassy carbon electrode and the characterization of the modified surfaces

The goal of this study was to prepare novel glassy carbon electrode surfaces using two similar bis-diazonium salts, 3,8-benzo[c]cinnoline (3,8-BCC-BDAS) and 3,8-benzo[c]cinnoline 5-oxide (3,8-BCCNO-BDAS) at the glassy carbon (GC) surface. These diazonium salts were reduced electrochemically and covalently electrografted onto the glassy carbon electrode surface to form modified electrodes. Electrochemical reduction of 3,8-BCC-BDAS and 3,8-BCCNO-BDAS salts on the electrode surface yielded a compact and stable film. The existence of BCC moieties on the GC surface was characterized by X-ray photoelectron spectroscopy, reflectance-adsorption infrared spectroscopy, cyclic voltammetry, ellipsometry, and electrochemical impedance spectroscopy. The stability and working potential range of the novel modified electrodes were also studied. The possibility of analytical application of these novel surfaces for inorganic cations and especially selectivity to copper ions was investigated. 3,8-diaminobenzo[c]cinnoline (3,8-DABCC) and its 5-oxide derivative (3,8-DABCCNO) were synthesized from the reductive cyclization of 2,2′-dinitrobenzidine and prepared their bisdiazonium salts via the tetrazotization reactions of the diamines with NaNO₂. The structures of 3,8-DABCC and 3,8-DABCCNO and their corresponding bisdiazonium salts are confirmed by spectral analysis.     

Simultaneous analysis of mitotane and its main metabolites in human blood and urine samples by SPE-HPLC technique

Adrenocortical carcinoma (ACC) is a rare malignancy with an incompletely understood pathogenesis and a poor prognosis. The adrenalytic activity of mitotane has made it the most important single drug in the treatment of ACC. Unfortunately, the exact mechanism of mitotane action is still unknown. It is believed that mitotane belongs to the class of drugs that require metabolic transformation by cytochrome P450 for therapeutic action; therefore determination of plasma levels of not only mitotane but also its metabolites would help in carrying out the treatment. The objective of this work was to develop and validate an SPE‐HPLC method for simultaneous determination of mitotane and its metabolites in different biological fluids. The sample preparation consisted of a solid‐phase extraction on a Discovery DSC₁₈ cartridge, while analysis of extracts was performed on a Symmetry C₁₈ column. The usefulness of the proposed method was confirmed by analysis of plasma, red cell and urine samples from patient chronically treated with 1.5 g of mitotane. The patient involved in this study had a high plasma concentration of mitotane and none of the investigated metabolites were found. In order to investigate whether the polymorphism of CYP2C9 and CYP2C19 enzymes could be related to the metabolism of mitotane, RT‐PCR analysis was performed. Copyright © 2012 John Wiley & Sons, Ltd.     

ProBiS-database: precalculated binding site similarities and local pairwise alignments of PDB structures

ProBiS-Database is a searchable repository of precalculated local structural alignments in proteins detected by the ProBiS algorithm in the Protein Data Bank. Identification of functionally important binding regions of the protein is facilitated by structural similarity scores mapped to the query protein structure. PDB structures that have been aligned with a query protein may be rapidly retrieved from the ProBiS-Database, which is thus able to generate hypotheses concerning the roles of uncharacterized proteins. Presented with uncharacterized protein structure, ProBiS-Database can discern relationships between such a query protein and other better known proteins in the PDB. Fast access and a user-friendly graphical interface promote easy exploration of this database of over 420 million local structural alignments. The ProBiS-Database is updated weekly and is freely available online at http://probis.cmm.ki.si/database.     

Synthesis and characterization of γ-Fe2O3/carbon hybrids and their application in removal of hexavalent chromium ions from aqueous solutions

Magnetic Fe(2)O(3)/carbon hybrids were prepared in a two-step process. First, acetic acid vapor interacted with iron cations dispersed on the surface of a nanocasted ordered mesoporous carbon (CMK-3). In the second step, the primarily created iron acetate species underwent pyrolysis and transformed to magnetic iron oxide nanoparticles. X-ray diffraction, Fourier-transform infrared, and Raman spectroscopies were used for the chemical and structural characterization of the hybrids, while surface area measurements, thermal analysis, and transmission electron microscopy were employed to determine their physical, surface, and textural properties. These results revealed the preservation of the host carbon structure, which was homogenously and controllably loaded (up to 27 wt %) with nanosized (ca. 20 nm) iron oxides inside the mesoporous system. M?ssbauer spectroscopy and magnetic measurements at low temperatures confirmed the formation of γ-Fe(2)O(3) nanoparticles exhibiting superparamagnetic behavior. The kinetic studies showed a rapid removal of Cr(VI) ions from the aqueous solutions in the presence of these magnetic mesoporous hybrids and a considerably increased adsorption capacity per unit mass of sorbent in comparison to that of pristine CMK-3 carbon. The results also indicate highly pH-dependent sorption efficiency of the hybrids, whereas their kinetics was described by a pseudo-second-order kinetic model. Taking into account the simplicity of the synthetic procedure and possibility of magnetic separation of hybrids with immobilized pollutant, the developed mesoporous nanomaterials have quite real potential for applications in water treatment technologies.     

On-chip electrochemical detection of CdS quantum dots using normal and multiple recycling flow through modes

A flexible hybrid polydimethylsiloxane (PDMS)-polycarbonate (PC) microfluidic chip with integrated screen printed electrodes (SPE) was fabricated and applied for electrochemical quantum dots (QDs) detection. The developed device combines the advantages of flexible microfluidic chips, such as their low cost, the possibility to be disposable and amenable to mass production, with the advantages of electrochemistry for its facility of integration and the possibility to miniaturize the analytical device. Due to the interest in biosensing applications in general and particularly the great demand for labelling alternatives in affinity biosensors, the electrochemistry of cadmium sulfide quantum dots (CdS QDs) is evaluated. Square wave anodic stripping voltammetry (SWASV) is the technique used due to its sensitivity and low detection limits that can be achieved. The electrochemical as well as the microfluidic parameters of the developed system are optimized. The detection of CdS QDs in the range between 50 to 8000 ng mL(-1) with a sensitivity of 0.0009 μA/(ng mL(-1)) has been achieved. In addition to the single in-chip flow through measurements, the design of a recirculation system with the aim of achieving lower detection limits using reduced volumes (25 μL) of sample was proposed as a proof-of-concept.     

Catalytic activity of halohydrin dehalogenases towards spiroepoxides

A novel activity of halohydrin dehalogenases towards spiroepoxides has been found. The enzyme from Arthrobacter sp. (HheA) catalysed highly regioselective azidolysis of spiroepoxides containing 5, 6 and 7-membered cycloalkane rings, while the enzyme from Agrobacterium radiobacter (HheC), besides high regioselectivity, also displayed moderate to high enantioselectivity (E up to >200) that can be applied for the kinetic resolution of chiral spiroepoxides. The orientations of spiroepoxides in the active site of halohydrin dehalogenases were studied by quantum-chemical calculations and docking simulations. Analyses of the complexes obtained revealed the origins of diastereoselectivity and enantioselectivity of the investigated biotransformations.     

Optical study of the formation of pyrrolo[2,3-d]pyrimidine-based fluorescent nanoaggregates

Pyrrolo[2,3-d]pyrimidine derivatives possessing different sterically-hindered end-groups at position 7 of the heterocycle were studied and compared with respect to nanoaggregate formation ability by the reprecipitation method in aqueous solutions. The emergence of nanoaggregates with an increasing water fraction in THF/water mixture was traced by observing sudden changes in spectral and transient fluorescence dynamics accompanied by fluorescence efficiency turn-on. The aggregation induced emission with a maximal 20-fold emission efficiency enhancement was obtained. Tuning of the nanoaggregates sizes from about 50 nm to 600 nm by increasing the THF/water ratio was revealed by electron microscopy. Almost perfect spherical shapes of the nanoaggregates and their structureless fluorescence bands similar to those of their neat amorphous films suggested an amorphous-like nature of the pyrrolo[2,3-d]pyrimidine-based nanoparticles.     

Comparison of the Temperature Effect on the π∗←n and π∗←π Electronic Transition Bands of NO<Subscript>3</Subscript><Superscript>−</Superscript>(aq)

The effect of temperature on the π∗←π transition band in the UV absorption spectrum of NO₃⁻(aq) centered at ≈200 nm was studied in the temperature range 10–70 ^∘C. The observed temperature independence of this band was in contrast to the significant influence of temperature on the nitrate π∗←n transition reported recently by us. However, taking into account the electronic states involved in both the transitions, it was concluded that this finding was in accordance with our previous assumption that interconversion between spectrally distinct (with respect to π∗←n band) nitrate species included the rupture/formation of hydrogen bond(s) in the hydration shell of the nitrate ion.