Aggregation and self-assembly of amphiphilic block copolymers in aqueous dispersions of carbon nanotubes

The self-assembly (SA) of amphiphilic block copolymers (poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide)) was investigated in dispersions of single-walled and multiwalled carbon nanotubes (SWNT and MWNT, respectively) as a function of temperature. Differential scanning calorimetry (DSC) was used for characterization of the thermal behavior of the combined polymers-nanostructures system, and spin-probe electron paramagnetic resonance (EPR) was employed for probing the local dynamic and polarity of the polymer chains in the presence of nanostructures. It was found that SWNT and MWNT modify the temperature, enthalpy, and dynamic behavior of polymer SA. In particular, SWNT were found to increase the cooperativity of aggregating chains and dominate aggregate dynamics. MWNT reduced the cooperativity, while colloidal carbon black additives, studied for comparison, did not show similar effects. The experimental observations are consistent with the suggestion that dimensional matching between the characteristic radius of the solvated polymer chains and the dimensions of additives dominate polymer SA in the hybrid system.     

Heterolytic bond dissociation in water: why is it so easy for C4H9Cl but not for C3H9SiCl?

The recently developed (Song, L.; Wu, W.; Zhang, Q.; Shaik, S. J. Phys. Chem. A 2004, 108, 6017-6024) valence bond method coupled to a polarized continuum model (VBPCM) is used to address the long standing conundrum of the heterolytic dissociation of the C-Cl and Si-Cl bonds, respectively, in tertiary-butyl chloride and trimethylsilyl chloride in condensed phases. The method is used here to compare the bond dissociation in the gas phase and in aqueous solution. In addition to the ground state reaction profile, VB theory also provides the energies of the purely covalent and purely ionic VB structures as a function of the reaction coordinate. Accordingly, the C-Cl and Si-Cl bonds are shown to be of different natures. In the gas phase, the resonance energy arising from covalent-ionic mixing at equilibrium geometry amounts to 42 kcal/mol for tertiary-butyl chloride, whereas the same quantity for trimethylsilyl chloride is significantly higher at 62 kcal/mol. With such a high value, the root cause of the Si-Cl bonding is the covalent-ionic resonance energy, and this bond belongs to the category of charge-shift bonds (Shaik, S.; Danovich, D.; Silvi, B.; Lauvergnat, D.; Hiberty, P. C. Chem.- Eur. J. 2005, 11, 6358). This difference between the C-Cl and Si-Cl bonds carries over to the solvated phase and impacts the heterolytic cleavages of the two bonds. For both molecules, solvation lowers the ionic curve below the covalent one, and hence the bond dissociation in the solvent generates the two ions, Me3E+ Cl- (E = C, Si). In both cases, the root cause of the barrier is the loss of the covalent-ionic resonance energy. In the heterolysis reaction of Si-Cl, the covalent-ionic resonance energy remains large and fully contributes to the dissociation energy, thereby leading to a high barrier for heterolytic cleavage, and thus prohibiting the generation of ions. By contrast, the covalent-ionic resonance energy is smaller for the C-Cl bond and only partially contributes to the barrier for heterolysis, which is consequently small, leading readily to ions that are commonly observed in the classical SN1 mechanism. Thus, the reluctance of R3Si-X molecules to undergo heterolysis in condensed phases and more generally the rarity of free silicenium ions under these conditions are experimental manifestations of the charge-shift character of the Si-Cl bond.     

Long-lasting dashed waves in a reactive microemulsion

In the Belousov-Zhabotinsky (BZ) reaction carried out in a reverse microemulsion with Aerosol OT as surfactant, the existence of two different sizes of droplets containing the BZ reactants leads to the emergence of segmented (dashed) waves. This bimodal distribution of sizes is stabilized by adding small amounts of the homopolymer poly(ethylene oxide) (PEO). Addition of PEO lengthens the period during which these patterns are observed, so that dashed waves can persist for 12-14 h, in contrast to the 2-3 h found in earlier studies without added polymer.     

Quantum and molecular mechanical study of the first proton transfer in the catalytic cycle of cytochrome P450cam and its mutant D251N

In the catalytic cycle of cytochrome P450cam, the hydroperoxo intermediate (Cpd 0) is formed by proton transfer from a reduced oxyheme complex (S5). This process is drastically slowed down when Asp251 is mutated to Asn (D251N). We report quantum mechanical/molecular mechanical (QM/MM) calculations that address this proton delivery in the doublet state through a hydrogen-bond network in the Asp251 channel, both for the wild-type enzyme and the D251N mutant, using four different active-site models. For the wild-type, we find a facile concerted mechanism for proton transfer from protonated Asp251 via Wat901 and Thr252 to the FeOO moiety, with a barrier of about 1 kcal/mol and a high exothermicity of more than 20 kcal/mol. In the D251N mutant with a neutral Asn251 residue, the proton transfer is almost thermoneutral or slightly exothermic in the three models considered. It is still very facile when the Asn251 residue adopts a conformation analogous to Asp251 in the wild-type enzyme, but the barrier increases significantly when the Asn251 side chain flips (as indicated by classical molecular dynamics simulations). This flip disrupts the hydrogen-bond network and hence the proton-transfer pathway, which causes a longer lifetime of S5 in the D251N mutant (consistent with experimental observations). The entry of an additional water molecule into the active site of D251N with flipped Asn251 regenerates the hydrogen-bond network and provides a viable mechanism for proton delivery in the mutant, with a moderate barrier of about 7 kcal/mol.     

Formation of the active species of cytochrome p450 by using iodosylbenzene: a case for spin-selective reactivity

The generation of the active species for the enzyme cytochrome P450 by using the highly versatile oxygen surrogate iodosylbenzene (PhIO) often produces different results compared with the native route, in which the active species is generated through O(2) uptake and reduction by NADPH. One of these differences that is addressed here is the deuterium kinetic isotope effect (KIE) jump observed during N-dealkylation of N,N-dimethylaniline (DMA) by P450, when the reaction conditions change from the native to the PhIO route. The paper presents a theoretical analysis targeted to elucidate the mechanism of the reaction of PhIO with heme, to form the high-valent iron-oxo species Compound I (Cpd I), and define the origins of the KIE jump in the reaction of Cpd I with DMA. It is concluded that the likely origin of the KIE jump is the spin-selective chemistry of the enzyme cytochrome P450 under different preparation procedures. In the native route, the reaction proceeds via the doublet spin state of Cpd I and leads to a low KIE value. PhIO, however, diverts the reaction to the quartet spin state of Cpd I, which leads to the observed high KIE values. The KIE jump is reproduced here experimentally for the dealkylation of N,N-dimethyl-4-(methylthio)aniline, by using intra-molecular KIE measurements that avoid kinetic complexities. The effect of PhIO is compared with N,N-dimethylaniline-N-oxide (DMAO), which acts both as the oxygen donor and the substrate and leads to the same KIE values as the native route.     

Chiral separation: mechanism modeling in two-dimensional systems

Fluid phase separations of racemates are difficult because the subtle, short-ranged differences in intermolecular interactions of like and unlike pairs of chiral molecules are typically smaller than the thermal energy. A surface restricts the configurational space available to the pair of interacting molecules, thus changing the effective interactions between them. Because of this restriction, a surface can promote chiral separation of mixtures that are racemic in bulk. In this paper, we investigate chiral symmetry breaking induced by an achiral surface in a racemate. A parallel tempering Monte Carlo algorithm with tempering over the temperature domain is used to examine the interplay between molecular geometry and energetics in promoting chiral separations. The system is restricted to evolve in two dimensions. By controlling the balance between electrostatic and steric interactions, one can direct the surface assembly of the chiral molecules toward formation of small clusters of identical molecules. When molecular shape asymmetry is complemented by dipolar alignment, chiral micellar clusters of like molecules are assembled on the surface. We examine the case of small model molecules for which the two-dimensional restriction of the pair potential is sufficient to induce chiral segregation. An increase in molecular complexity can change the balance of intermolecular interactions to the point that heterochiral pairs are energetically more favored. In this case, we find conditions in which formation of homochiral micelles is still achieved, due to a combination of multibody and entropic effects. In such systems, an examination of the pair potential alone is insufficient to predict whether the multimolecular racemate will or will not segregate.     

Compound I of nitric oxide synthase: the active site protonation state

A quantum mechanical/molecular mechanical (QM/MM) study of the formation of the elusive active species Compound I (Cpd I) of nitric oxide synthase (NOS) from the oxyferrous intermediate shows that two protons have to be provided to produce a reaction that is reasonably exothermic and that leads to the appearance of a radical on the tetrahydrobiopterin cofactor. Molecular dynamics and energy considerations show that a possible source of proton is the water H-bond chain formed from the surface to the active site, but that a water molecule by itself cannot be the source of the proton; an H3O+ species that is propagated along the chain is more likely. The QM/MM calculations demonstrate that Cpd I and H2O are formed from the ferric-hydrogen peroxide complex in a unique heterolytic O-O cleavage mechanism. The properties of the so-formed Cpd I are compared with those of the known species of chloroperoxidase, and the geometry and spin densities are found to be compatible. The M?ssbauer parameters are calculated and may serve as experimental probes in attempts to characterize NOS Cpd I.