Synthesis and solution properties of rodlike polyelectrolytes

The synthesis and the solution behavior of rigid, rodlike cationic polyelectrolytes having (i) poly(p-phenylene) backbones and (ii) main chains composed of 4,4“-bis(2,2′:6′,2”-terpyridine)2′,5′-dihexyl-p-terphenyl moieties and ruthenium(II) centers are presented. All these polymers are shown to have a homogeneous constitution and degrees of polymerization of up to P_n ≈ 70. Their solution properties were analyzed using viscosimetry, small-angle X-ray scattering (SAXS) and osmometry. Pronounced polyelectrolyte effects were found in salt-free solutions using viscosimetry. Small-angle X-ray scattering demonstrated directly the strong correlation of the counterions and the macroions. The osmotic coefficients measured in salt-free solution as function of polyelectrolyte concentration were found to be lower than predicted by the cell model.     

Vibrational spectroscopy of formamide-intercalated kaolinites

The vibrational spectroscopy of low and high defect kaolinites fully and partially intercalated with formamide have been determined using a combination of X-ray diffraction, DRIFT and Raman spectroscopy. Expansion of the high defect kaolinite to 10.09 A resulted in a decrease in the peak width of the d(001) peak attributed to a decrease in defect structures upon intercalation. Changes in the defect structures of the low defect kaolinite were observed. Additional infrared bands were observed for the formamide intercalated kaolinites at 3629 and 3606 cm(-1). The 3629 cm(-1) band is attributed to the hydroxyl stretching frequency of the inner surface hydroxyl group hydrogen bonded to the carboxyl group of the formamide. The 3606 cm(-1) band is ascribed to water in the interlayer. Concomitant changes are observed in both the hydroxyl deformation modes and in the carboxyl bands.     

Nonlinear adsorption isotherm as a tool for understanding and characterizing molecularly imprinted polymers

Molecularly imprinted polymers (MIPs) have frequently been characterized by quantities which are easily determined from experiments but have no theoretical foundation. This makes it difficult to compare different MIP preparations or to transfer MIP based methods to different experimental conditions. Since the adsorption isotherms of MIPs are markedly nonlinear, one can build a better characterization strategy on isotherms as shown by examples in this paper.     

Spectroscopic observations of methane-pulverized coal flames

A premixed laminar flame burner was used to study physical and chemical effects of burning methane and pulverized coal simultaneously. Spectral emissions obtained as a function of height in the flame, for OH, CH, C₂, and CO were used to calculate excited state species number densities. Premixed methane-air flames with a number of equivalence ratios and methane-air-coal dust flames with three equivalence ratios were studied and differences were noted. Spatial temperatures were measured in all flames by means of a thermocouple probe.The introduction of a pulverized coal additive (30mg/min) leads to changes in OH, Ch, C₂, and CO number densities and temperature at various heights, which depend on the stoichiometry of the methane-air flame. Possible chemical and physical mechanisms responsible for these changes are discussed qualitatively. The data pose a severe test for any quantitative model which includes the fluid dynamics, gas-phase chemistry, heterogeneous processes, and radiation transport.     

Rescoring of docking poses under Occam’s Razor: are there simpler solutions?

Ligand affinity prediction from docking simulations is usually performed by means of highly empirical and diverse protocols. These protocols often involve the re-scoring of poses generated by a force field (FF) based Hamiltonian to provide either estimated binding affinities—or alternatively, some empirical goodness score. Re-scoring is performed by so-called scoring functions—typically, a reweighted sum of FF terms augmented by additional terms (e.g., desolvation/entropic penalty, hydrophobicity, aromatic interactions etc.). Sometimes, the scoring function actually drives ligand positioning, but often it only operates on the best scoring poses ranked top by the initial ligand positioning tool. In either of these rather intricate scenarios, scoring functions are docking-specific models, and most require machine-learning-based calibration. Therefore, docking simulations are less straightforward when compared to “standard” molecular simulations in which the FF Hamiltonian defines the energy, and affinity emerges as an ensemble average property over pools of representative conformers (i.e., the trajectory). Paraphrasing on Occam’s Razor principle, additional model complexity is only acceptable if demonstrated to bring a significant improvement of prediction quality. In this work we therefore examined whether the complexity inherent to scoring functions is indeed justified. For this purpose we compared sampler for multiple protein–ligand entities, a general purpose conformation sampler based on the AMBER/GAFF FF, complemented with continuum solvation terms, with several state of the art docking tools that rely on calibrated scoring functions (Glide, Gold, Autodock-Vina) in terms of its ability to top-rank the actives from large and diverse ligand series associated with various proteins. There is no clear winner of this study, where each program performed well on most of the targets, but also failed with respect to at least one of them. Therefore, a well-parameterized force field with a simple, energy-based ligand ranking protocol appears to be an as effective docking protocol as intricate rescoring strategies based on scoring functions. A tool that can sample the conformational space of the free ligand, the bound ligand and the protein binding site using the same force field may avoid many of the approximations common to contemporary docking protocols and allow e.g., for docking into highly flexible active sites, when current scoring functions are not well suited to estimate receptor strain energies.     

Intersection of sets with -connected unions

We show that if sets in a topological space are given so that all the sets are closed or all are open, and for each every of the sets have a -connected union, then the sets have a point in common. As a consequence, we obtain the following starshaped version of Helly's theorem: If every or fewer members of a finite family of closed sets in have a starshaped union, then all the members of the family have a point in common. The proof relies on a topological KKM-type intersection theorem.

     

Catalytic oxidation with air of cyclohexanone to dicarboxylic acids on synthetic carbons. Effect of supported metals and solvents

The oxidation with air of cyclohexanone was conducted in the presence of synthetic carbons catalysts. The effect of carbon activation treatment (CO2 or air burnoff), phosphorus additive, platinum loading, and nature of the solvent (water or water/acetic acid mixture) were studied. Cyclohexanone oxidation at 140 degrees C yielded a mixture of C6, C5, and C4 dicarboxylic acids. Air activated carbons, including those containing phosphorus or those supporting platinum, resulted in a higher yield of adipic acid. The activity and selectivity was associated with the oxygenated functional groups, essentially carbonyl/quinone groups, created during air activation of the carbon. The incorporation of phosphorus into the carbon increased slightly the selectivity to 34.3%, probably because this additive increased the density of oxygenated functional groups. The deposition of platinum by impregnation and liquid-phase reduction with formaldehyde increased the reaction rate and improved the selectivity to adipic acid, where the highest figure was 38.8%. It was suggested that platinum contributed to molecular oxygen activation. In contrast platinum deposition by cationic exchange followed by reduction under H2 resulted often in a detrimental effect probably because the density of the oxygenated groups on carbon is decreased upon H2 reduction in the presence of platinum. When the oxidation of cyclohexanone was carried out in mixtures of water/acetic acid, the selectivity given by the different samples were quite close and generally smaller than those obtained in water which indicates that acetic acid interacts with the oxygenated surface functional groups responsible for the activity and selectivity. Oxidation experiments with methyl-labeled 4-methylcyclohexanone indicated that glutaric acid was produced by oxidative decarbonylation of both the C1 and C2 carbon atoms of the molecule.     

Chromium (II) Alkoxides

Novel extremely oxygen sensitive (many pyrophoric) alkoxides of Cr(II) were prepared by alcoholysis of Cr[N(SiMe₃)₂]₂LL′, where L, L′ = ether, THF, or Py. They were characterized by elemental analyses, reflectance spectroscoppy, solubility, and chemical behavior. Solubility of the alkoxides is influenced most by drying conditions. Thoroughly dried aliphatic products are quite insoluble and exhibit coordinations polymer characteristics. Sterically hindered alkoxides are less associated, more soluble in general, and tend to form crystalline adducts with donor ligands. Primary alcohols (except MeOH) gave yellow/brown, secondary alcohols purple/violet and tertiary alcohols (as well as many phenols) blue derivatives. Some chemical reactions of selected alkoxides are discussed.