Ligand binding properties of myoglobin reconstituted with iron porphycene: unusual O2 binding selectivity against CO binding

Sperm whale myoglobin, an oxygen storage hemoprotein, was successfully reconstituted with the iron porphycene having two propionates, 2,7-diethyl-3,6,12,17-tetramethyl-13,16-bis(carboxyethyl)porphycenatoiron. The physicochemical properties and ligand bindings of the reconstituted myoglobin were investigated. The ferric reconstituted myoglobin shows the remarkable stability against acid denaturation and only a low-spin characteristic in its EPR spectrum. The Fe(III)/Fe(II) redox potential (-190 mV vs NHE) determined by the spectroelectrochemical measurements was much lower than that of the wild-type. These results can be attributed to the strong coordination of His93 to the porphycene iron, which is induced by the nature of the porphycene ring symmetry. The O2 affinity of the ferrous reconstituted myoglobin is 2600-fold higher than that of the wild-type, mainly due to the decrease in the O2 dissociation rate, whereas the CO affinity is not so significantly enhanced. As a result, the O2 affinity of the reconstituted myoglobin exceeds its CO affinity (M' = K(CO)/K(O2) < 1). The ligand binding studies on H64A mutants support the fact that the slow O2 dissociation of the reconstituted myoglobin is primarily caused by the stabilization of the Fe-O2 sigma-bonding. The IR spectra for the carbon monoxide (CO) complex of the reconstituted myoglobin suggest several structural and/or electrostatic conformations of the Fe-C-O bond, but this is not directly correlated with the CO dissociation rate. The high O2 affinity and the unique characteristics of the myoglobin with the iron porphycene indicate that reconstitution with a synthesized heme is a useful method not only to understand the physiological function of myoglobin but also to create a tailor-made function on the protein.     

An iterative type I polyketide synthase PKSN catalyzes synthesis of the decaketide alternapyrone with regio-specific octa-methylation

A biosynthetic gene cluster containing five genes, alt1-5, was cloned from Alternaria solani, a causal fungus of early blight disease to tomato and potato. Homology searching indicated that the alt1, 2, and 3 genes code for cytochrome P450s and the alt4 gene for a FAD-dependent oxygenase/oxidase. The alt5 gene encodes a polyketide synthase (PKS), named PKSN, that was found to be an iterative type I complex reduced-type PKS with a C-methyltransferase domain. To identify the PKSN function, the alt5 gene was introduced into the fungal host Aspergillus oryzae under an alpha-amylase promoter. The transformant produced a polyketide compound, named alternapyrone, whose structure is shown to be 3,5-dimethyl-4-hydroxy-6-(1,3,5,7,11,13-hexamethyl-3,5,11-pentadecatrienyl)-pyran-2-one. Labeling experiments confirmed that alternapyrone is a decaketide with octa-methylation from methionine on every C(2) unit except the third unit.     

Water cluster growth in hydrophobic solid nanospaces

The growth mechanism of water clusters in carbon nanopores is clearly elucidated by in situ small-angle X-ray scattering (SAXS) studies and grand canonical Monte Carlo (GCMC) simulations at 293-313 K. Water molecules are isolated from each other in hydrophobic nanopores below relative pressures (P/P(0)) of 0.5. Water molecules associate with each other to form clusters of about 0.6 nm in size at P/P(0)=0.6, accompanied by a remarkable aggregation of these clusters. The complete filling of carbon nanopores finishes at about P/P(0)=0.8. The correlation length analysis of SAXS profiles leads to the proposal of a growth mechanism for these water clusters and the presence of the critical cluster size of 0.6 nm leads to extremely stable clusters of water molecules in hydrophobic nanopores. Once a cluster of the critical size is formed in hydrophobic nanopores, the predominant water adsorption begins to fill carbon nanopores.     

Fast oxygen ion migration in Cu–In–oxide bulk and its utilization for effective CO2 conversion at lower temperature

Efficient activation of CO₂ at low temperature was achieved by reverse water–gas shift via chemical looping (RWGS-CL) by virtue of fast oxygen ion migration in a Cu–In structured oxide, even at lower temperatures. Results show that a novel Cu–In₂O₃ structured oxide can show a remarkably higher CO₂ splitting rate than ever reported. Various analyses revealed that RWGS-CL on Cu–In₂O₃ is derived from redox between Cu–In₂O₃ and Cu–In alloy. Key factors for high CO₂ splitting rate were fast migration of oxide ions in the alloy and the preferential oxidation of the interface of alloy–In₂O₃ in the bulk of the particles. The findings reported herein can open up new avenues to achieve effective CO₂ conversion at lower temperatures.

Efficient activation of CO₂ at low temperature was achieved by reverse water–gas shift via chemical looping (RWGS-CL) by virtue of fast oxygen ion migration in a Cu–In structured oxide, even at lower temperatures.     

Photosensing Device Composed of Bilayer Membranes of Polymer-Pendant Ru(bpy)3 2+ and Prussian Blue

A photosensing device was fabricated based on a photochemical electron transfer reaction. A graphite electrode was coated with bilayer membranes of polymer-pendant Ru(bpy)₃ ²⁺ and Prussian Blue (PB) to give a bilayer-coated device. It was irradiated with visible light in an aqueous electrolyte and the induced photocurrent was measured as a function of the applied potential. The excitation of PB was responsible for the anodic photocurrent, while the excitation of the Ru complex mainly induced the cathodic photocurrent by an electron-transfer mechanism.     

Application of Polymer-Embedded Tris(2,2′ Bipyridine-Ruthenium(II) to Photodetection of Oxygen

A Nafion film containing tris(2,2′-bipyridine)ruthenium(II) as a luminescence probe was applied to photodetection of oxygen in a gas by utilizing the luminescence quenching by dioxygen. The linear Stern-Volmer plots of the emission intensity with respect to the oxygen concentration allowed quantitative determination of the oxygen. From the emission decay studied by a single-photon counting method, it was concluded that the quenching of the excited state Ru complex by oxygen proceeds by a conventional dynamic mechanism.     

Determination of l‐tryptophan and l‐kynurenine derivatized with (R)‐4‐(3‐isothiocyanatopyrrolidin‐1‐yl)‐7‐(N,N‐dimethylaminosulfonyl)‐2,1,3‐benzoxadiazole by LC‐MS/MS on a triazole‐bonded column and their quantification in human serum

The concentrations of l ‐tryptophan (Trp) and the metabolite l ‐kynurenine (KYN) can be used to evaluate the in‐vivo activity of indoleamine 2,3‐dioxygenase (IDO) and tryptophan 2,3‐dioxygenase (TDO). As such, a novel method involving derivatization of l ‐Trp and l ‐KYN with (R)‐4‐(3‐isothiocyanatopyrrolidin‐1‐yl)‐7‐(N,N‐dimethylaminosulfonyl)‐2,1,3‐benzoxadiazole (DBD‐PyNCS) and separation by high‐performance liquid chromatography (HPLC) with tandem mass spectrometric (MS/MS) detection on a triazole‐bonded column (Cosmosil HILIC®) was developed to determine their concentrations. The optimized mobile phase, CH₃CN/10 mm ammonium formate in H₂O (pH 5.0) (90:10, v/v) eluted isocratically, resulted in satisfactory separation and MS/MS detection of the analytes. The detection limits of l ‐Trp and l ‐KYN were approximately 50 and 4.0 pm , respectively. The column temperature affected the retention behaviour of the Trp and KYN derivatives, with increased column temperatures leading to increased capacity factors; positive enthalpy changes were revealed by van't Hoff plot analyses. Using the proposed LC‐MS/MS method, l ‐Trp and l ‐KYN were successfully determined in 10 μL human serum using 1‐methyl‐l ‐Trp as an internal standard. The precision and recovery of l ‐Trp were in the ranges 2.85–9.29 and 95.8–113%, respectively, while those of l ‐KYN were 2.51–16.0 and 80.8–98.2%, respectively. The proposed LC‐MS/MS method will be useful for evaluating the in vivo activity of IDO or TDO. Copyright © 2016 John Wiley & Sons, Ltd.     

Ishigadine A,a new canthin-6-one alkaloid from an Okinawan marine sponge Hyrtios sp.

A new indole alkaloid with the canthin-6-one skeleton, ishigadine A, has been isolated from an Okinawan marine sponge Hyrtios sp. The structure of ishigadine A was elucidated on the basis of spectroscopic analyses. Ishigadine A is a new canthin-6-one alkaloid possessing a hydroxy group, a 1,3-dimethyl-4-methylthioimidazolium, and a 1-propylguanidine. Ishigadine A is the third canthin-6-one alkaloid from sponges. Ishigadine A might be generated from l-arginine, l-histidine, and l-tryptophan. Ishigadine A exhibited moderate cytotoxicity against L1210 murine leukemia cells.     

First principles investigations of hydrazine adsorption conformations on Ni(111) surface

Theoretical investigation on hydrazine (N₂H₄) adsorption on Ni(111) was done by using density functional theory. Stability and mechanism of hydrazine adsorption in anti, gauche and cis conformation on nickel surface were studied. Charge transfer between lone-pair orbital and d-band was found to stabilize the anti-conformation as the most stable conformation, in contrast with hydrazine in the gas-phase where gauche conformation is more favored. However, the derived anti-bonding state between adsorbate and substrate is partially occupied due to the spin-polarization in the local states near the Fermi level and thus contributes in weakening the bonding. The stable adsorption structure was further verified by comparing the calculated vibrational frequencies with HREELS measurement results. The results were found to be in agreement with experimental results. It was also found that the adsorption in cis-conformation is a transition state as evident from the existence of imaginary frequency on its lowest vibrational mode which belongs to NH₂ torsional movement around N–N axis.