Bodipy-VAD-Fmk, a useful tool to study yeast peptide N-glycanase activity

In this paper the development of a fluorescent activity based probe, Bodipy-VAD-Fmk, for visualization of yeast peptide N-glycanase is described. The activity based probe is used to assess the efficacy of known and new chitobiose-based electrophilic traps to bind yeast peptide N-glycanase.     

Protein detection and quantitation by tetraphenylethene-based fluorescent probes with aggregation-induced emission characteristics

Three functionalized derivatives of tetraphenylethylene (TPE), namely, 1,2-bis(4-methoxyphenyl)-1,2-diphenylethene (1), 1,2-bis(4-hydroxyphenyl)-1,2-diphenylethene (2), and 1,2-bis[4-(3-sulfonatopropoxyl)phenyl]-1,2-diphenylethene sodium salt (3), were synthesized and their fluorescence properties were investigated. All the TPE molecules are nonluminescent in the solution state but are induced to emit efficiently by aggregate formation. This novel process of aggregation-induced emission (AIE) is rationalized to be caused by the restriction of intramolecular rotations of the dye molecules in the aggregate state. The possibility of utilizing the AIE effect for protein detection and quantification is explored using bovine serum albumin (BSA) as a model protein, with salt 3 being found to perform as a stable, sensitive, and selective bioprobe.     

Impact of ligand protonation on eigen-type metal complexation kinetics in aqueous systems

The impact of ligand protonation on metal speciation dynamics is quantitatively described. Starting from the usual situation for metal complex formation reactions in aqueous systems, i.e., exchange of water for the ligand in the inner coordination sphere as the rate-determining step (Eigen mechanism), expressions are derived for the lability of metal complexes with protonated and unprotonated ligand species being involved in formation of the precursor outer-sphere complex. A differentiated approach is developed whereby the contributions from all outer-sphere complexes are included in the rate of complex formation, to an extent weighted by their respective stabilities. The stability of the ion pair type outer-sphere complex is given particular attention, especially for the case of multidentate ligands containing several charged sites. It turns out that in such cases, the effective ligand charge can be considerably different from the formal charge. The lability of Cd(II) complexes with 1,2-diaminoethane-N,N'-diethanoic acid at a microelectrode is reasonably well predicted by the new approach.     

Equilibrium structure of sulfuric acid

The equilibrium structure of the more stable conformer of H2SO4, of C2 symmetry, has been calculated ab initio using the CCSD(T) method and taking into account the core correlation correction. The accuracy of this structure has been checked by comparing it to that of similar molecules and by estimating the effects of basis set enlargement and of diffuse functions. Furthermore, the quadratic, cubic, and quartic force fields have been calculated at the MP2 level of theory using a basis set of triple-zeta quality. The spectroscopic constants derived from the force field are in satisfactory agreement with the experimental ones. The resulting band origins are compared to literature infrared values, including those for overtone and combination bands. Normal modes of vibration are pictured. Using this force field, semiexperimental equilibrium rotational constants are determined which allows us to check the accuracy of the ab initio structure and to refine it using a mixed regression method.     

Switching the light emission of (4-biphenylyl)phenyldibenzofulvene by morphological modulation: crystallization-induced emission enhancement

(4-Biphenylyl)phenyldibenzofulvene is weakly luminescent in the amorphous phase but becomes highly emissive upon crystallization; this unusual crystallization-induced emission enhancement effect allows its emission to be repeatedly switched between dark and bright states by fuming-heating and heating-cooling processes.     

On the properties of a primitive semiclassical surface hopping propagator for nonadiabatic quantum dynamics

A previously developed nonadiabatic semiclassical surface hopping propagator [M. F. Herman J. Chem. Phys. 103, 8081 (1995)] is further studied. The propagator has been shown to satisfy the time-dependent Schrodinger equation (TDSE) through order h, and the O(h2) terms are treated as small errors, consistent with standard semiclassical analysis. Energy is conserved at each hopping point and the change in momentum accompanying each hop is parallel to the direction of the nonadiabatic coupling vector resulting in both transmission and reflection types of hops. Quantum mechanical analysis and numerical calculations presented in this paper show that the h2 terms involving the interstate coupling functions have significant effects on the quantum transition probabilities. Motivated by these data, the h2 terms are analyzed for the nonadiabatic semiclassical propagator. It is shown that the propagator can satisfy the TDSE for multidimensional systems by including another type of nonclassical trajectories that reflect on the same surfaces. This h2 analysis gives three conditions for these three types of trajectories so that their coefficients are uniquely determined. Besides the nonadiabatic semiclassical propagator, a numerically useful quantum propagator in the adiabatic representation is developed to describe nonadiabatic transitions.     

Dolphin (Tursiops truncatus) echoic angular discrimination: effects of object separation and complexity

A bottlenose dolphin was tested on its ability to echoically discriminate horizontal angular differences between arrays of vertically oriented air-filled PVC rods. The blindfolded dolphin was required to station in a submerged hoop 2 radial m from the stimuli and indicate if an array with two rods (S+) was to the right or the left of a single rod (S-). The angular separation between the two rods (thetaw) was held constant within each experiment while the angle between the S+ and the S-stimuli (thetab) varied to produce angular differences (deltatheta= thetab-thetaw) ranging from 0.25 to 4 degrees. In experiment I, thetaw was maintained at 2 degrees and in experiment II, thetaw was maintained at 4 degrees. Resulting 75% correct thresholds (method of constant stimuli) were 1.5 and 0.7 degrees, respectively. The two main findings of this study are: (1) decreasing the number of targets does not aid in localization, and (2) increasing the space between the rods enhances localization. Taken as a whole, the experiments suggest dolphins have a well-developed ability to resolve spatial information through sonar.     

Experimental study of thermoacoustic effects on a single plate Part II: Heat transfer

 Heat fluxes close to the edge of a heated solid plate aligned parallel to the axis of an acoustic standing wave were measured for drive ratios DR≡P _A/p _m of 1, 2 and 3. It was found that at the highest drive ratio (3), the resulting heat flux vector at the edge of the plate is directed into the plate, opposite to the direction of the heat flux imposed by the resistive heaters within the plate. This observation confirms the thermoacoustic effect previously detected in the visualized temperature fields and discussed in part I of this paper. Through the energy balance the magnitudes of the heat fluxes into the plate, caused by the thermoacoustic effect, were determined. The measured data are in good agreement with numerical and analytical predictions. Received on 18 August 1999