Some Features of Nucleophilic Substitution Reactions of N-2-Haloethyl Derivatives of 5,5-Substituted Hydantoins

Russian Journal of General Chemistry - Reaction of 5,5-dimethyl-3-(2-chloroethyl)- and 5,5-diphenyl-3-(2-bromoethyl)- hydantoins with potassium 4-aminobenzoate in dimethylformamide in the presence...     

A New Metal-Organic Framework: Product of Solvothermal Synthesis in 3D-Printed Autoclaves

Russian Journal of Coordination Chemistry - A new metal-organic framework {Zn4(BDC)3(OAc)2(DMF)4} (BDC = terephthalate anion) was synthesized under solvothermal conditions in a 3D-printed...     

exo- and endo-Complexes of Fe(0) with Carbon Allotropic Modifications on the Example of Fullerene С60: a Density Function Theory Study

Russian Journal of General Chemistry - Structures of exo- and endo-complexes of fullerene C60 with zero-valent Fe0, in which the metal is localized inside and outside fullerene molecule,...     

Understanding the thermal stability of human serum proteins with the related near-infrared spectral variables selected by Monte Carlo-uninformative variable elimination

Understanding the thermal stability of the proteins in human serum is essential since human serum is the important source of pharmaceutical proteins. Near-infrared (NIR) spectroscopy was applied to the investigation of thermal changes in secondary structure and hydration of human serum proteins. However, as a multicomponent system, the overlap of the broad NIR bands makes the structural analysis very difficult directly using the spectra of serum samples. Therefore, continuous wavelet transform (CWT) was used to improve the resolution of NIR spectra, and Monte Carlo-uninformative variable elimination (MC-UVE) method was applied to the selection of the variables associated with the proteins for the structural analysis. The variables (5956, 5867, 5815, 5747, 4525, 4401, 4359 and 4328 cm^-1) related to protein secondary structures and those (7074, 6951, 6827 and 6700 cm^-1) connected with water species were selected. Then, the thermal stability was analyzed through the intensity variations of the selected variables with temperature from 30 ℃ to 80 ℃. It was found that the variation of the spectral variables related to both α-helix and β-sheetchanges apparently around 60 ℃, indicating the beginning of the thermal denaturation and the transition from α-helix to β-sheet. Moreover, an obvious change was found around 60 ℃ for the content of the water specie S₃, i.e., the water cluster containing three hydrogen bonds. The result demonstrates that MC-UVE can identify the protein-related NIR spectral variables, and the water species may be a marker for investigation of the structural change of proteins in biochemical systems.     

Synthesis of novel non-natural spiro[2.3]hexane amino acids,the conformationally restricted analogs of γ-aminobutyric acid

3-Methylenecyclobutanecarboxylic acid and its methyl ester were used as the starting compounds for the synthesis of new spiro[2.3]hexane amino acids, the conformationally rigid analogs of γ-aminobutyric acid, namely, 5-aminospiro[2.3]hexanecarboxylic and 5-amino-spiro[2.3]hexanephosphonic acids, promising modulators of GABAergic cascades in the human central nervous system. The methods developed for the synthesis of the target amino acids are based on the reactions of catalytic [1+2] cycloaddition of diazoacetic and diazophosphonic esters to 3-substituted methylenecyclobutanes, as well as on a modified Curtius reaction for the transformation of a carboxy group to the amine one.     

Zinc-containing derivatives of 2-aminopyrimidine

A platform containing three anticancer components is proposed. The components are a radioactive ⁶⁹mZn isotope and zinc complexes, where both zinc and ligand exhibit anticancer properties. Two zinc-containing complexes, namely (2-AP)₂ZnCl₂ and (2-AP)₂Zn(Sal)₂ (AP is 2-aminopyrimidine, Sal is salicylate) were synthesized and characterized. Their cytotoxicity with respect to some leukemia cell lines is demonstrated. Their stability in physiological solution and percentage of apoptosis (by flow cytometry) are investigated. Stable complexes of compounds with the isotope ⁶⁹mZn were characterized by TLC and autoradiography.     

Synthesis of complexes of N-vinylpyrrolidone–vinylamine or N-vinylpyrrolidone–allylamine containing macrocyclic polyligand 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetate (DOTA) with gallium-68 isotope and estimation of their in vivo distribution

Russian Chemical Bulletin - A method for radiolabeling the water-soluble N-vinylpyrrolidone copolymers with N-vinyl- and N-allylamine containing bifunctional chelation unit...     

Regularities of oxygen and water thermal desorption from barium cerate doped by neodymium,samarium, and gadolinium

Processes of thermal desorption of oxygen molecules and water from BaCe_1–x M _x O_3–δ, where M= Nd, Sm, and Gd, presintered in air at the temperature of 650°C are studied. It is found that oxygen is desorbed only from neodymium–doped barium cerate and is almost not evolved from barium cerate doped by samarium and gadolinium. The amount of desorbed oxygen features a square dependence on cationic doping by neodymium. At similar degrees of cationic doping, the amount of water desorbed from neodymium–doped barium cerate is always lower than that from the cerate doped by samarium and gadolinium. The obtained experimental data on thermal desorption and analysis of literature data served as a basis for the conclusion as to the mixed valency of neodymium Nd(III)–Nd(IV) in BaCe_1–x Nd _x O_3–δ. In this case, at similar doping degrees x, the hydration degree of BaCe_1–x Nd _x O_3–δ is lower and the oxygen index is higher than in BaCe1_–x (Sm,Gd) _x O_3–δ. The differences become more pronounced at high degrees of cationic doping and must decrease at an increase in temperature.     

Quantitative Proteomic Analysis of Optimal Cutting Temperature (OCT) Embedded Core-Needle Biopsy of Lung Cancer

With recent advances in understanding the genomic underpinnings and oncogenic drivers of pathogenesis in different subtypes, it is increasingly clear that proper pretreatment diagnostics are essential for the choice of appropriate treatment options for non-small cell lung cancer (NSCLC). Tumor tissue preservation in optimal cutting temperature (OCT) compound is commonly used in the surgical suite. However, proteins recovered from OCT-embedded specimens pose a challenge for LC-MS/MS experiments, due to the large amounts of polymers present in OCT. Here we present a simple workflow for whole proteome analysis of OCT-embedded NSCLC tissue samples, which involves a simple trichloroacetic acid precipitation step. Comparisons of protein recovery between frozen versus OCT-embedded tissue showed excellent consistency with more than 9200 proteins identified. Using an isobaric labeling strategy, we quantified more than 5400 proteins in tumor versus normal OCT-embedded core needle biopsy samples. Gene ontology analysis indicated that a number of proliferative as well as squamous cell carcinoma (SqCC) marker proteins were overexpressed in the tumor, consistent with the patient’s pathology based diagnosis of “poorly differentiated SqCC”. Among the most downregulated proteins in the tumor sample, we noted a number of proteins with potential immunomodulatory functions. Finally, interrogation of the aberrantly expressed proteins using a candidate approach and cross-referencing with publicly available databases led to the identification of potential druggable targets in DNA replication and DNA damage repair pathways. We conclude that our approach allows LC-MS/MS proteomic analyses on OCT-embedded lung cancer specimens, opening the way to bring powerful proteomics into the clinic.

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Adsorption of nonionic surfactant on porous and nonporous poly(ethylene terephthalate) films

The application of surfactants in the chemical etching of track membranes enables one to control their pore shape. To find out the mechanism of the surfactant action on the track etching in the nanometer range of pore sizes, the adsorption of a nonionic surfactant (polyoxyethyelene-4-nonylphenyl ether) on porous and nonporous poly(ethylene terephthalate) films has been studied. The experimental results have been analyzed in comparison with the data previously obtained on the adsorption of an anionic surfactant on similar films. It has been concluded that the behaviors of anionic and nonionic surfactants in negatively charged pores about 100 nm in radius are strongly different due to the electrostatic exclusion of co-ions from the pores, which is of significance only for compounds dissociating into ions.