Comparative inhibition by substrate analogues 3-methoxy- and 3-hydroxydesaminokynurenine and an improved 3 step purification of recombinant human kynureninase.

Background  

Kynureninase is a key enzyme on the kynurenine pathway of tryptophan metabolism. One of the end products of the pathway is the neurotoxin quinolinic acid which appears to be responsible for neuronal cell death in a number of important neurological diseases. This makes kynureninase a possible therapeutic target for diseases such as Huntington's, Alzheimer's and AIDS related dementia, and the development of potent inhibitors an important research aim.     

Variable step molecular dynamics: An exploratory technique for peptides with fixed geometry

A new algorithm is presented for performing molecular dynamics simulations of peptides with fixed geometry, with the aim of simulating conformational changes and of exploring conformational space. The principle of the method is to expand the potential energy as a Taylor's series in the coordinates around the current point, retaining the force and its first two derivatives, and obtain a series solution of the resulting differential equations using a method due to Lyapunov. By choosing the time step so that the second term in the series is small compared to the first, the true solution can in principle be approximated to any desired degree of accuracy. The algorithm has been used to solve numerically Lagrange's equations of motion for N-acetyl alanine amide and N-acetyl methionide amide, regarded as fixed at their C-termini, under the influence of the ECEPP/2 potential energy function, and time steps of 15–30 fsec have been achieved with little variation in the total energy. Possible directions for future development are discussed.     

Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy

We report here a strategy for the photolithographic synthesis of diverse, spatially addressable arrays of cyclic peptides which employs a differential deprotection strategy for the combinatorial addition of side chains to a pre-fabricated cyclic core.     

Dilute solution properties of a polyurethane. I. Linear polymers

A linear polyurethane of high molecular weight was prepared in solution by the polyaddition of equimolar amounts of ethylene glycol and methylene bis(4-phenyl isocyanate). The polymer was fractionated by using a direct sequential extraction procedure, with a solvent–nonsolvent system consisting of N,N′-dimethylformamide (DMF) and acetone (A). The resulting fractions were characterized by viscosity and lightscattering measurements. The relationship between the intrinsic viscosity and molecular weight was found in DMF at 25°C. to be [η] = 3.64 × 10^?4M^0.71. The unperturbed polymer chain dimensions were determined from intrinsic viscosity measurements carried out under experimentally determined theta conditions.     

Electron-transfer polymers. XXIX. Copolymerizability of vinylhydroquinone derivatives

Ten vinylhydroquinone and one vinyl resorcinol derivatives are compared, particularly with respect to NMR spectra and copolymerizability with styrene. They are vinylhydroquinone dimethyl ether (I), vinyl-O,O′-bis(1-ethoxyethyl)hydroquinone (II), vinylhydroquinone di(2-pentyl)ether (III), 4-vinyl resorcinol bismethoxymethyl ether (IV), 2-vinyl-5-methylhydroquinone dimethyl ether (V), 2-vinyl-5-methyl-O,O′-bis(1-ethoxyethyl)hydroquinone (VI), 2-vinyl-6-methylhydroquinone dimethyl ether (VII), 2-vinyl-5-tert-butylhydroquinone dimethyl ether (VIII), 2-vinyl-5-chlorohydroquinone dimethyl ether (IX), 2-vinyl-3,6-dimethylhydroquinone dimethyl ether (X), and 2-vinyl-3,5,6-trimethylhydroquinone dimethyl ether (XI). All the vinyl protons have almost the same coupling constants. Though subtle distinctions are found among all the spectra, they can in general be put into two groups on the basis of the chemical shifts. Let the hydrogen on carbon-1 of the vinyl group be A, the hydrogen cis to A be B the hydrogen trans to A be C, then in the first group, (I) through (IX), the chemical shifts (τ) are (A) 3.02 ± 0.08, (C) 4.41 ± 0.05, and (B) 4.87 ± 0.07, and in the second group, (X) and (XI), they are (A) 3.30 ± 0.03, (C) 4.49 ± 0.01, and (B) 4.59 ± 0.03. It is supposed that in (X) and (XI) the vinyl group is out of the plane of the ring, because of the two ortho substituents, and this conformation is reflected in the NMR data. Ultraviolet spectra are consonant with this interpretation, since the λ_max of (X) and (XI) correspond closely with those of nonvinyl reference compounds, while those of (II), (V), and (VIII) are shifted to longer wavelengths. When these compounds are copolymerized separately with styrene, the behaviors are classifiable into the following three groups, where r₁ and r₂ are monomer reactivity ratios with styrene as the first monomer: (i) r₁ < 1 and r₂ < 1 for compounds (II) and (III) and the reference compound O,O′-dibenzoylvinylhydroquinone, (ii) r₁ < 1 and r₂ > 1 for compounds (I), (V), (VII), (VIII), (IX), and (iii) r₁ > 1 and r₂ = 0 for compounds (X) and (XI). These behaviors are correlated with the effect of electronegativity of groups on the stability of the radical at the growing end of the chain and with the simultaneous effects of steric hindrance.     

Spatial geometric arrangements of disulfide-crosslinked loops in nonplanar proteins

The method presented earlier [T. Kikuchi, G. Némethy, and H.A. Scheraga, (1986) J. Comput. Chem. 7 , 67] for the classification of patterns of the three-dimensional folding of a covalently crosslinked polypeptide chain has been extended to nonplanar proteins. The procedure described earlier was applicable only to proteins termed planar, i.e., with a connexity of the crosslinks (e.g., disulfide bonds) that can be represented in a planar diagram. The procedure described in the present work is applicable to any (planar or nonplanar) pattern of crosslinking. The classification is based on a systematic and objective method of enumeration of spatial geometric arrangements of loops (SGAL) using no information other than the location of the disulfide bonds in the amino acid sequence. Various SGAL classes correspond to the presence of different ways of mutual penetration of loops, called thrustings and entanglements. Information on SGAL classes can be of use in structural predictions of folding patterns of proteins.     

Asymptotics for the Fredholm determinant of the sine kernel on a union of intervals

In the bulk scaling limit of the Gaussian Unitary Ensemble of hermitian matrices the probability that an interval of lengths contains no eigenvalues is the Fredholm determinant of the sine kernel over this interval. A formal asymptotic expansion for the determinant ass tends to infinity was obtained by Dyson. In this paper we replace a single interval of lengths bysJ, whereJ is a union ofm intervals and present a proof of the asymptotics up to second order. The logarithmic derivative with respect tos of the determinant equals a constant (expressible in terms of hyperelliptic integrals) timess, plus a bounded oscillatory function ofs (zero ifm=1, periodic ifm=2, and in general expressible in terms of the solution of a Jacobi inversion problem), pluso(1). Also determined are the asymptotics of the trace of the resolvent operator, which is the ratio in the same model of the probability that the set contains exactly one eigenvalue to the probability that it contains none. The proofs use ideas from orthogonal polynomial theory.Research supported by National Science Foundation grant DMS-9216203.     

On nonnegative solvability of linear operator equations

LetE be a Banach lattice having order continuous norm. Suppose, moreover,T is a nonnegative reducible operator having a compact iterate and which mapsE into itself. The purpose of this work is to extend the previous results of the authors, concerning nonnegative solvability of (kernel) operator equations on generalL ^p-spaces. In particular, we provide necessary and sufficient conditions for the operator equation x=T x+y to possess a nonnegative solutionxE wherey is a given nonnegative and nontrivial element ofE and is any given positive parameter.     

Level-spacing distributions and the Airy kernel

Scaling level-spacing distribution functions in the bulk of the spectrum in random matrix models ofN×N hermitian matrices and then going to the limitN leads to the Fredholm determinant of thesine kernel sin(x–y)/(x–y). Similarly a scaling limit at the edge of the spectrum leads to theAiry kernel [Ai(x)Ai(y)–Ai(x)Ai(y)]/(x–y). In this paper we derive analogues for this Airy kernel of the following properties of the sine kernel: the completely integrable system of P.D.E.'s found by Jimbo, Miwa, Môri, and Sato; the expression, in the case of a single interval, of the Fredholm determinant in terms of a Painlevé transcendent; the existence of a commuting differential operator; and the fact that this operator can be used in the derivation of asymptotics, for generaln, of the probability that an interval contains preciselyn eigenvalues.