DNA libraries for the construction of phage libraries: statistical and structural requirements and synthetic methods

Peptide-based molecular probes identified by bacteriophage (phage) display technology expand the peptide repertoire for in vivo diagnosis and therapy of cancer. Numerous peptides that bind cancer-associated antigens have been discovered by panning phage libraries. However, until now only few of the peptides selected by phage display have entered clinical applications. The success of phage derived peptides essentially depends on the quality of the library screened. This review summarizes the methods to achieve highly homogenous libraries that cover a maximal sequence space. Biochemical and chemical strategies for the synthesis of DNA libraries and the techniques for their integration into the viral genome are discussed in detail. A focus is set on the methods that enable the exclusion of disturbing sequences. In addition, the parameters that define the variability, the minimal numbers of copies per library and the use of alternating panning cycles to avoid the loss of selected hits are evaluated.     

Yellowing and IR-changes of spruce wood as result of UV-irradiation

The yellowing and IR-changes of spruce wood as a result of UV-irradiation were studied using two different types of xenon lamps (lambda>300 nm; I(o)=50 mW cm(-2) and lambda>280 nm; I(o)=17.5 mW cm(-2)). Changes in the IR spectra as well as the yellowing of the irradiated wood surfaces show the influence of UV light on the wood modules. The UV-irradiation (72 h; lambda>300 nm; I(o)=50 mW cm(-2)) decreased the lignin content on the surface by up to 20% of the original values. The colour difference of yellowing (deltaE) exhibited a systematic trend to higher values with increasing irradiation time. Our results show that the photoyellowing (UV-Vis detection) correlates very well with lignin degradation (IR detection). This result is in agreement with the quinone formation as the chromophoric reaction product of lignin decay. The degradation, yellowing, and oxidation kinetics differed only little using different light sources. The absorbed light intensity, which depends on wavelength, the intensity distribution of the light source and the absorption spectrum of lignin, influenced the degradation rate. Under the current experimental conditions, the absorption spectrum of lignin was the most important factor. Therefore, irradiation with lambda>280 nm is useful for rapidly monitoring the UV-degradation of wood     

Improved chemical composition separation of ethylene–propylene random copolymers by high-temperature solvent gradient interaction chromatography

High-temperature solvent gradient interaction chromatography (HT-SGIC) is a fast and efficient fractionation technique for the chemical composition analysis of olefin copolymers. The separation of ethylene–propylene random copolymers (EPRs) was achieved on a graphitic stationary phase, Hypercarb, at 160 °C by using linear solvent gradient elution from 1-decanol to 1,2,4-trichlorobenzene (TCB). In the present work, the solvent gradient profile was modified to improve the chromatographic separation of EPRs. With the aim to obtain a better resolution in separation, a slow increase in the volume fraction of TCB was applied. This allowed for a relatively large retention region for linear polyethylene (PE) chains on the column; thereby, a broader elution volume zone between the start of the gradient and the PE elution was achieved. The efficiency of this new gradient profile was demonstrated by analysing two fully amorphous EPR samples. Clear differences in the chemical composition of these EPR samples with similar ethylene contents have been proven by using this modified solvent gradient. The comprehensive chemical composition and microstructure analysis of the SGIC-separated fractions by FTIR revealed that ethylene/propylene (EP) copolymer chains were eluted according to their ethylene/propylene contents and E or P sequence lengths, even though they are distributed in a random manner. These results showed that the solvent composition is an important factor to affect the interactive adsorption or desorption behaviour of EP chains on Hypercarb. In this way, for the first time, the determination of the complex composition and chain structure of EPR samples was achieved within short analysis time, which is not possible till now using other fractionation techniques reported.

Ferroelectrically switchable columnar liquid crystal

Abstract

The synthesis of a new disc-like mesogenic compound permitted, for the first time, ferroelectric electrooptical switching in a tilted columnar liquid crystal. The spontaneous molecular dipole moment is induced by the bend between the dibenzopyrene core and part of the eight O-hexyllactic acid chains attached to it. Two similar new compounds displayed a weak electrooptical effect in the columnar phase.     

Structure of 1-Thia-closo-dodecaborane(11), 1-SB11H11, as determined by microwave spectroscopy complemented by quantum chemical calculations

The microwave spectrum of 1-thia-closo-dodecaborane(11), 1-SB(11)H(11), has been investigated in the 23-62 GHz spectral region. The molecule is found to have C(5v) symmetry. The spectra of several isotopomers have been assigned and a precise substitution structure of the non-hydrogen atoms has been determined. The structure is in quite good agreement with the one determined previously by electron diffraction. Density functional theory calculations at the B3LYP/cc-pVTZ level were found to predict a structure that is in good agreement with the substitution structure.     

Synthese und Kristallstrukturbestimmung von Dimethyldi-(N-Methylimidazolium)siliciumbromid

Synthesis and Crystal Structure Determination of Dimethyldi-(N-Methylimidazolium)silicon Bromide The reaction of dibromodimethylsilane with n-methylimidazole (NMI) leads to a 1:2 compound stable at room temperature. The reaction was carried out at room temperature and colorless, moisture sensitive crystals were obtained by sublimation. The addition compound crystallizes in the orthorhombic space group Pcam (No. 57) with lattice constants a = 1 110 96(8) pm, b = 1 142.3(2) pm and c = 1 238.9(3) pm. For 1 317 independent reflections, measured at 21°C, the structure could be refined to R = 0.040 and R_w = 0.041.     

Die Bildung cyclischer Amidiniumiodide und -polyiodide aus 1,3,5-Trimethyl-hexahydro-1,3,5-triazin und Iod

Formation of cyclic Amidiniumiodides and -polyiodides from 1,3,5-Trimethyl-hexahydro-1,3,5-triazine and Iodine The reaction of 1,3,5-trimethyl-hexahydro-1,3,5-triazine (CH₃NCH₂)₃ with iodine in the molar ratio (CH₃NCH₂)₃:I₂ = 2:1 gives the new compound 1,3,5-trimethyl-tetrahydro-1,3,5-triazinium-iodide C₆H₁₄N₃I. This iodide adds one mole I₂ and forms 1,3,5-trimethyl-tetrahydro-1,3,5-triazinium-triiodide C₆H₁₄N₃I₃. The crystal structure analysis shows a cation, in which two methyl groups and five ring atoms are planar arranged. The third methyl group stands axial to the ring. 1,3,5-Trimethyl-tetrahydro-1,3,5-triazinium-pentaiodide is formed by adding a further mole I₂.     

Bio serves nano: biological light-harvesting complex as energy donor for semiconductor quantum dots

Light-harvesting complex (LHCII) of the photosynthetic apparatus in plants is attached to type-II core-shell CdTe/CdSe/ZnS nanocrystals (quantum dots, QD) exhibiting an absorption band at 710 nm and carrying a dihydrolipoic acid coating for water solubility. LHCII stays functional upon binding to the QD surface and enhances the light utilization of the QDs significantly, similar to its light-harvesting function in photosynthesis. Electronic excitation energy transfer of about 50% efficiency is shown by donor (LHCII) fluorescence quenching as well as sensitized acceptor (QD) emission and corroborated by time-resolved fluorescence measurements. The energy transfer efficiency is commensurable with the expected efficiency calculated according to F?rster theory on the basis of the estimated donor-acceptor separation. Light harvesting is particularly efficient in the red spectral domain where QD absorption is relatively low. Excitation over the entire visible spectrum is further improved by complementing the biological pigments in LHCII with a dye attached to the apoprotein; the dye has been chosen to absorb in the "green gap" of the LHCII absorption spectrum and transfers its excitation energy ultimately to QD. This is the first report of a biological light-harvesting complex serving an inorganic semiconductor nanocrystal. Due to the charge separation between the core and the shell in type-II QDs the presented LHCII-QD hybrid complexes are potentially interesting for sensitized charge-transfer and photovoltaic applications.