Electrochemical characteristics of Ce0.8Gd0.2O1.9|La0.6Sr0.4CoO3-δ + Ce0.8Gd0.2O1.9 half-cell

The analysis of the medium temperature half-cell Ce_0.8Gd_0.2O_1.9|70 wt% La_0.6Sr_0.4CoO_3- (LSCO) + 30 wt % Ce_0.8Gd_0.2O_1.9 (CGO) has been made by electrochemical impedance, cyclic voltammetry and chronoamperometry. The shape of complex impedance plots depends on temperature and cathodic polarisation of the electrode. Nyquist (Z, Z-) plots were fitted by equivalent circuit taking into account the electrolyte properties (at very high frequencies), charge transfer process at grain boundaries (at high frequencies), and medium and low frequency O₂ reduction process at the cathode surface and inside the porous cathode material. Two different time constants have been obtained for the cathode process, i.e. for electroreduction of oxygen. It was found that the addition of CGO into the cathode material (LSCO) only somewhat decreases the surface catalytic activity but the noticeably higher low-frequency resistance (i.e. mainly diffusion-like mass transfer resistance R_D) values at lower temperatures have been calculated. It was found that the mainly bulk diffusion-limited process at T773 K deviates toward the kinetically mixed process (diffusion + charge transfer) with increasing temperature.     

Proton binding to proteins: pK(a) calculations with explicit and implicit solvent models

Ionizable residues play important roles in protein structure and activity, and proton binding is a valuable reporter of electrostatic interactions in these systems. We use molecular dynamics free energy simulations (MDFE) to compute proton pKa shifts, relative to a model compound in solution, for three aspartate side chains in two proteins. Simulations with explicit solvent and with an implicit, dielectric continuum solvent are reported. The implicit solvent simulations use the generalized Born (GB) model, which provides an approximate, analytical solution to Poisson's equation. With explicit solvent, the direction of the pKa shifts is correct in all three cases with one force field (AMBER) and in two out of three cases with another (CHARMM). For two aspartates, the dielectric response to ionization is found to be linear, even though the separate protein and solvent responses can be nonlinear. For thioredoxin Asp26, nonlinearity arises from the presence of two substates that correspond to the two possible orientations of the protonated carboxylate. For this side chain, which is partly buried and has a large pKa upshift, very long simulations are needed to correctly sample several slow degrees of freedom that reorganize in response to the ionization. Thus, nearby Lys57 rotates to form a salt bridge and becomes buried, while three waters intercalate along the opposite edge of Asp26. Such strong and anisotropic reorganization is very difficult to predict with Poisson-Boltzmann methods that only consider electrostatic interactions and employ a single protein structure. In contrast, MDFE with a GB dielectric continuum solvent, used for the first time for pKa calculations, can describe protein reorganization accurately and gives encouraging agreement with experiment and with the explicit solvent simulations.     

The crystal structure of Hf3As

Hf₃As has a monoclinic unit cell of dimensions a = 15.3898(14) Å, b = 5.3795(5) Å, c = 15.330(14) Å, β = 90.291(6)°. A structure proposal based on space group $\text{C2}\text{c}$ (No. 15) has been refined by the least-squares method using a Rietveld-type fullprofile analysis of Guinier-Hägg X-ray powder film intensity data. The Hf₃As structure is an intermediate between the Fe₃P and the Ti₃P types. The atomic coordination follows rules formulated earlier for representatives of the Fe₃PTi₃PV₃S family of structures.     

Stereoselective synthesis of optically active bicyclic beta-lactam carboxylic acids that target pilus biogenesis in pathogenic bacteria

Optically active bicyclic beta-lactams were synthesized, starting from 2-H-delta 2-thiazolines and Meldrum's acid derivatives. Several methods to accomplish an ester hydrolysis without damaging the beta-lactam framework were investigated. A rapid CsOH saponification of the beta-lactam methyl esters was developed and protonation of the Cs-carboxylates by Amberlite (IR-120 H+) afforded a series of bicyclic beta-lactam carboxylic acids. Moreover, a convenient method for the synthesis of 2-H-delta 2-thiazolinecarboxylic acid methyl ester 2 was developed. Bicyclic beta-lactam carboxylic acids 7a-g and aldehydes 4a-d were screened for their affinity to the bacterial periplasmic chaperone PapD using a surface plasmon resonance technique. beta-Lactams substituted with large acyl substitutents showed better binding to the chaperone than the native C-terminal peptide PapG 8, demonstrating that bicyclic beta-lactams constitute a new class of potential bacterial chaperone inhibitors.     

Fourier transform infrared reflection-absorption spectroscopy of amino acids adsorbed on metal surfaces

Fourier transform infrared reflection-absorption spectroscopy (FT-IRAS) has been used to study the orientation and coordination of glycine, L-phenylalanine and L-histidine on gold and copper surfaces. It was found that glycine and L-histidine were weakly adsorbed (physisorbed) in the zwitterionic form on gold. The surface chemical bonding of L-histidine and L-phenylalanine to copper were chemical rather than physical by nature. Conclusive evidence was obtained for coordination to copper through both the amino-nitrogen and carboxylate-oxygen atoms.     

Local polarizabilities in molecules,based on ab initio Hartree-Fock calculations

A method to separate the total molecular polarizability, calculated in the uncoupled Hartree-Fock approximations, into local contributions is proposed. The method is tested for H₂, H₂O, H₂CO and C₆H₆ and the results are discussed. It is found that the ratio of the polarizability contributions for two atoms in a molecule almost only depends on the type of atoms and is almost independant of molecule.     

Inter- and intramolecular potential for the N-formylglycinamide-water system. A comparison between theoretical modeling and empirical force fields

An intramolecular NEMO potential is presented for the N-formylglycinamide molecule together with an intermolecular potential for the N-formylglycinamide-water system. The intramolecular N-formylglycinamide potential can be used as a building block for the backbone of polypeptides and proteins. Two intramolecular minima have been obtained. One, denoted as C5, is stabilized by a hydrogen bonded five member ring, and the other, denoted as C7, corresponds to a seven membered ring. The interaction between one water molecule and the N-formylglycinamide system is also studied and compared with Hartree-Fock SCF calculations and with the results obtained for some of the more commonly used force fields. The agreement between the NEMO and SCF energies for the complexes is in general superior to that of the other force fields. In the C7 region the surfaces obtained from the intramolecular part of the commonly used force fields are too flat compared to the NEMO potential and the ab initio calculations. We further analyze the possibility of using a charge distribution obtained from one conformation to describe the charge distribution of other conformations. We have found that the use of polarizabilities and generic dipoles can model most of the changes in charge density due to the different geometry of the new conformations, but that one can expect additional errors in the interaction energies that are of the order of 1 kcal/mol.     

On-line coupling of supercritical fluid extraction with high-performance liquid chromatography for the determination of explosives in vapour phases

An investigation into the selectivity of an iminodiacetic acid (IDA) modified silica gel column for transition and heavy metal ions using non-chelating inorganic eluents has been carried out. A number of eluent parameters were investigated to determine the exact retention mechanism taking place and to control selectivity. The parameters studied were eluent ionic strength and the nature of the inorganic salt used, eluent pH and eluent temperature. The results obtained showed how despite certain metal ions exhibiting similar stability constants with the bonded IDA groups, careful control of each of the above parameters, in particular eluent chloride ion concentration and eluent temperature, could result in large changes in selectivity. Optimal conditions for the isocratic and gradient separation of Mg(II), Ca(II), Mn(II), Cd(II), Co(II), Zn(II) and Pb(II) were determined. An isocratic method using a 0.035 M KCl, 0.065 M KNO3 (pH 2.5) eluent was successfully applied to the determination of Mn(II), Cd(II), Co(II) and Zn(II) at concentrations between 20 and 121 microg/l in a freshwater certified reference material (NIST 1640).