Raman H-bond pair volume for water

The dispersion of the H-bond pair volume Delta V over the decoupled OD and coupled OH-stretching contours from HDO in H(2)O was determined from Raman intensities at pressures to 9700 bar at 301 K. The dispersion of Delta V was determined from -RT[partial differential ln(I(i)/I(REF))/ partial differential P](T) versus omega (in cm(-1)), where i refers to omega's over the stretching contours and I(REF) refers to the reference intensity at the isosbestic frequency. The maximum H-bond pair volume (defined for breakage) is 1.4+/-0.1 cm(3)/mol H-bond, which corresponds to the volume difference between a large dispersion maximum at 2,675 cm(-1) (near the OD stretch omega of HDO in dense supercritical water) and a large, broad minimum centered near 2,375 cm(-1) (just below the OD stretch omega of HDO in lda ice). The average DeltaV is 0.71+/-0.10 cm(3)/mol H-bond. Other minima near 2,625 cm(-1) (OD) and 3550 cm(-1) (OH) refers to bent H-bonds whose angles are approximately 150 deg. Isothermal pressurization of water lowers the molal volume by decreasing the concentration of long, weak H-bonds, and increasing the concentrations of bent H-bonds and short, strong, linear H-bonds. Such bending, shortening, and strengthening produces freezing to ice VI near 10 kbar at 301 K. The isobaric temperature derivative of the maximum H-bond volume is (partial differential Delta V/partial differential T)(P)< or =(2-5) x 10(-3) cm(3)/deg mol H-bond. The OH enthalpy dispersion curve for saturated NaBF(4) in water, yields a large maximum at 3,530-3,540 cm(-1) indicating that BF(4) (-) interacts preferentially with the dangling or "free" OH groups of water thus producing weak, strongly bent H-bonds having angles similar to those of the 3,550 cm(-1) high-pressure H-bond bending feature.     

Solution-phase, triangular ag nanotriangles fabricated by nanosphere lithography

A novel method to produce solution-phase triangular silver nanoparticles is presented. Ag nanoparticles are prepared by nanosphere lithography and are subsequently released into solution. The resulting nanoparticles are asymmetrically functionalized to produce either single isolated nanoparticles or dimer pairs. The structural and optical properties of Ag nanoparticles have been characterized. Mie theory and the Discrete Dipole Approximation method (DDA) have been used to model and interpret the optical properties of the released Ag nanoparticles.     

Large-scale synthesis of globotriose derivatives through recombinant E. coli

The carbohydrate chains decorating cell membranes and secreted proteins participate in a range of important biological processes. However, their ultimate significance and possible therapeutic potential have not been fully explored due to the lack of economical methods for their production. This study is an example of the use of a genetically engineered bacterial strain in the preparation of diverse oligosaccharides. Based on an ex vivo biosynthetic pathway, an artificial gene cluster was constructed by linking the genes of five associated enzymes on a plasmid vector. This plasmid was inserted into the E. coli NM522 strain to form globotriose-producing cells ('superbug' pLDR20-CKTUF). The specific strain was conveniently applied to the synthesis of globotriose trisaccharide and its derivatives, as potential neutralizers for Shiga toxin. This work demonstrates a novel and economical method for generating ligand diversity for carbohydrate drug development.     

Theory of absorption and emission of radiation in molecular collisions: Semiclassical model

A semiclassical transition amplitude is derived for electronically inelastic molecular collisions in the presence of an intense electromagnetic field. The calculation of this amplitude involves the integration of classical trajectories for nuclei moving on effective potential energy surfaces. These surfaces, which exhibit an avoided crossing due to the coupling through the dipole interaction around the resonance nuclear configuration, are analytically continued to their complex intersection points, where trajectories switch surfaces. Other parts of these surfaces are similar to the field-free adiabatic surfaces, where one is shifted by ?ω. Metastable states, formed at some collision energies, are suggested in the field which are absent in the field-free system.     

Thermal addition of dibenzoylacetylene to cycloheptatriene and the photo-rearrangement of the thermal adduct

The reaction of cycloheptatriene (CHT) with dibenzoylacetylene (DBA), in refluxing toluene gave a mixture of products consisting of 6,7-dibenzoyltricyclo[3.2.2.0^2.4]nona-6,8-diene 6 and 3,4-dibenzoylbicyclo [3.2.2]nona-2,6,8-triene 7. Neat heating of a mixture of CHT and DBA around 95–100° gave besides, 6 and 7, small amounts of two dimers of DBA. Photolysis of 6 in benzene solution gave a lactonic, rearrangement product. 25. The structures of the various products have been established and reasonable mechanisms for their formation have been suggested.     

Cyclopentadienyl-ruthenium and -osmium chemistry: XXVIII. Reactions and isomerisation of 1,2-bis(methoxycarbonyl)ethenyl complexes: X-ray structures of Ru{Z)-C(CO2Me)CH(CO2Me)} -(CO)(PPh3)(η-C5H5) · 0.5EtOH,Ru{(E)-C(CO2Me)CH(CO2Me)}(dppe)(η-C5H5) and Ru{C(CO2Me)C(CO2Me)C(CO2Me)CH(CO2Me)} - (PPh3)(η-C5H5)

A reinvestigation of the reaction between C₂(CO₂Me)₂ and RuH(PPh₃)₂(η-C₅H₅) and some related complexes is reported. Initial cis addition is followed by conversion into the trans isomer. In the case of the bis-(PPh₃) complex, isomerisation is followed by chelation of the ester CO group with concomitant displacement of one PPh₃ligand. The resulting chelate complex reacts with CO or CNBu^t to give the (Z)-RuC(CO₂Me)CH(CO₂Me) complexes; the (E)-isomer of the carbonyl complex is obtained by addition of C₂(CO₂Me)₂to RuH(CO)(PPh₃)(η-C₅H₅). The ^1Hand ¹³C NMR spectra are not a reliable guide to assignment of the stereochemistry of the vinyl group. Other products isolated from the initial reaction are the bis-insertion product $\text{Ru{C(CO}{}_2\text{Me)C(CO}{}_2\text{Me)C(CO}{}_2\text{Me)}$CH(CO₂Me)} -(PPh₃)(η-C₅H₅) and the 1/2 PPh₃/C₂(CO₂Me)₂ adduct. The molecular structures of Ru{(Z)-C(CO₂Me)CH(CO₂Me)}(CO)(PPh₃(η-C₅H₅) · 0.5EtOH, Ru{(E)-C(C₂Me)CH(CO₂Me)}(dppe)(η-C₅H₅) and $\text{Ru{C(CO}{}_2\text{Me)C(CO}{}_2\text{Me)C(CO}{}_2\text{-Me)}$CH(CO₂Me)}(PPh₃)(η-C₅H₅) have been determined. The cis isomer is monoclinic, space group P2₁,with a 9.328(8), b 17.385(10), c 10.356(7) Å, β 101.78(3)° and Z = 2; 2107 data with I ≥ 2.5σ(I) were refined to R = 0.076 R_w = 0.085. The trans isomer is triclinic, space group P$\text{1}$, with a 10.404(7) b 11.221(6), c 13.230(9) Å, α 92.67(5), β 110.56(5), γ 106.21(5)° and Z = 2; 2520 data with I ≥ 2.5σ(I) were refined to R = 0.055 R_w = 0.068. The butadienyl complex is monoclinic, space group P2₁/a, with a 19.655(8), b 8.674(4), c 21.060(5) Å, β 116.22(3)° and Z = 4; 2724 data with I ≥ 2.5σ(I) were refined to R = 0.042, R_w = 0.047.     

Angular momentum decoupling approximations in the quantum dynamics of reactive systems

Two methods for implementing angular momentum decoupling approximations in quantum mechanical reactive scattering examined. Applications of both reactive and nonreactive H + H₂ collisions indicate that for the most intense individual reactive transitions and for all degeneracy-averaged ones, these decoupling methods (especially the “proper” decoupling method) yield results in good agreement with those of fully-coupled calculations. However, for the less intense reactive transitions and all individual nonreactive transitions, very large errors can result from use of these approximate methods.     

Δ4,4&#x27; -4-chalcogenapyranyl-4h-chalcogenapyrans : Synthesis,electrochemical oxidation,and esr investigations of radical-cation states

The O-, S-, Se- and Te-containing Δ^4,4' -2,2?,6,6'-tetramethyl-, -tetra-t-butyl- and -tetraphenyl-4-(chalcogenapyranyl)-4H-chalcogenapyrans were prepared from the corresponding chalcogenapyran-4-ones. The thia-, selena- and tellurapyran-4-ones were prepared by sodium borohydride reduction of the appropriate chalcogen and addition of the disodium chalcogenide to a 1,4-diyn-3-one. The comparative electrochemistry of all three series was examined by cyclic voltammetry. Within each scries the first oxidation (E₁) became more difficult with increasing chalcogen size. The radical-cation states of the tetra-t-butyl analogues were examined by ESR. The O and S analogues gave well-defined five-line spectra, but the Se and Te analogues gave broad single lines. The g value increased with increasing size of the heteroatom. A linear correlation exists between g value and spin-orbit coupling constants λ for the chalcogens, suggesting that the electron densities on the heteroatoms are similar in each heteroatom analogue.     

Crystal Structure and Packing of Isocyclosporin A

The crystal structure of isocyclosporin A ( 1 ), a rearrangement product of the immunosuppressant drug cyclosporin A, has been determined at 193 (2) K. Crystals are orthorhombic with cell dimensions a = 26.684 (7), b = 26.936 (3) Å, c = 28.549 (7) Å, space group C222₁. The structure was solved by direct methods and refined by full-matrix least-squares methods to a conventional R value of 0.110. In contrast to the structure of cyclosprin A in solution and in the crystal, isocyclosporin A ( 1 ) has no regular secondary structural elements. The backbone adopts an open, irregular conformation with cis amide bonds between residue 2 and 3, and 3 and 4, respectively. All the other amide bonds and the ester linkage are trans. Contrary to crystal structures of cyclosporin derivatives, this crystal structure is stabilized by two transannular and four intermolecular H-bonds.     

An ab initio study of the geometry,harmonic and anharmonic force fields,and fundamental vibrational frequencies of cis- and trans- thiolformic acid

The geometry, harmonic and anharmonic force fields, and fundamental vibrational frequencies of cis- and trans-thiolformic acid are studied ab initio in the 4-31G basis set. An extensive comparison is made between changes in diagonal and off-diagonal quadratic and cubic force constants and diagonal stretching quartic constants in going from the chain to the ring structure in thiolformic acid and formic acid. The changes in the force constants are indicative of a much weaker interaction in the trans conformer between S? H and O?C, compared with O–H and O?C, in keeping with the weaker hydrogenbonding property of the S? H group in general.