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991.
The complex of the HIV TAR RNA with the viral regulatory protein Tat is of considerable interest, but the plasticity of this interaction has made it impossible so far to establish the structure of that complex. In order to explore a new approach to obtain structural information on protein-RNA complexes, we performed (13)C/(15)N-(19)F REDOR NMR experiments in the solid state on TAR bound to a peptide comprising the RNA-binding section of Tat. A critical arginine in the peptide was uniformly (13)C and (15)N labeled, and 5-fluorouridine was incorporated at the U23 position of TAR. REDOR irradiation resulted in dephasing of the (13)C and (15)N resonances, indicating the proximity of the U23(5F)-C and U23(5F)-N spin pairs. Best fits to the REDOR data show the U23(5F)-C distances and the U23(5F)-N distances are in good agreement with the distances obtained from solution NMR structures of partial complexes of Tat with TAR. These results demonstrate that it is possible to study protein-RNA complexes using solid-state REDOR NMR measurements, adding to a growing list of solid state techniques for studying protein-nucleic acid complexes. 相似文献
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994.
Park JJ Luo X Yi H Valentine TM Payne GF Bentley WE Ghodssi R Rubloff GW 《Lab on a chip》2006,6(10):1315-1321
We report facile in situ biomolecule assembly at readily addressable sites in microfluidic channels after complete fabrication and packaging of the microfluidic device. Aminopolysaccharide chitosan's pH responsive and chemically reactive properties allow electric signal-guided biomolecule assembly onto conductive inorganic surfaces from the aqueous environment, preserving the activity of the biomolecules. A transparent and nonpermanently packaged device allows consistently leak-free sealing, simple in situ and ex situ examination of the assembly procedures, fluidic input/outputs for transport of aqueous solutions, and electrical ports to guide the assembly onto the patterned gold electrode sites within the channel. Both in situ fluorescence and ex situ profilometer results confirm chitosan-mediated in situ biomolecule assembly, demonstrating a simple approach to direct the assembly of biological components into a completely fabricated device. We believe that this strategy holds significant potential as a simple and generic biomolecule assembly approach for future applications in complex biomolecular or biosensing analyses as well as in sophisticated microfluidic networks as anticipated for future lab-on-a-chip devices. 相似文献
995.
Deacon GB Fallon GD Forsyth CM Harris SC Junk PC Skelton BW White AH 《Dalton transactions (Cambridge, England : 2003)》2006,(6):802-812
Redox transmetallation/ligand exchange reactions of lanthanoid metals (Ln), Hg(C6F5)2 and HOAr(OMe) (Ar(OMe) = C6H2-2,6-Bu(t)-4-OMe), in thf (tetrahydrofuran) gave, for Ln = Yb, [Yb(OAr(OMe))2(thf)3], and for Ln = Sm, a mixture of [Sm(II)(OAr(OMe))2(thf)3] and mainly [Sm(III)(Ar(OMe))3(thf)] x thf. X-Ray structure determinations show the divalent complexes to have distorted square-pyramidal stereochemistry with transoid thf and OAr(OMe) ligands in the basal plane. Treatment of [Yb(OAr(OMe))2(thf)3] with diethyl ether or PhMe at room temperature gave [Yb(OAr(OMe))2] or [Yb(OAr(OMe))2] x 0.5 PhMe. For lanthanoids Ln = Nd, Er or Y, the reactions with Hg(C6F5)2 and HOAr(OMe) yielded complex product mixtures, from one of which the novel erbium aryloxide fluoride cage [Er3(OAr(OMe))4(mu2-F)3(mu3-F)2(thf)4] x thf x 0.5 C6H14 was isolated. The cage core consists of a triangle of Er atoms joined to two mu3-fluoride ligands and three further mu2-fluorides bridge adjacent Er atoms. One of the Er atoms is six-coordinate with additionally two OAr(OMe) ligands whilst the other two have one OAr(OMe) and two thf ligands and are seven coordinate. Substitution of Hg(C6F5)2 by Hg(CCPh)2 in the redox transmetallation/ligand exchange reactions gave the new derivatives [Ln(OAr(OMe))3(thf)] x thf (Ln = La, Pr, Nd, Sm, Gd, Ho) in good yields whilst Ln = Yb gave [Yb(OAr(OMe))2(thf)3]. Recrystallisation of [Sm(OAr(OMe))3(thf)] x thf from dme (1,2-dimethoxyethane) yielded [Sm(OAr(OMe))3(dme)]. Structural characterisation of [Ln(OAr(OMe))3(thf)] x thf (Ln = Nd, Ho) and [Sm(OAr(OMe))3(dme)] showed monomeric four-coordinate distorted tetrahedral and five-coordinate distorted square-pyramidal complexes respectively. For the smaller lanthanoids Ln = Y, Er or Lu, reactions with Hg(CCPh)2 and HOAr(OMe) gave the mixed aryloxide/alkynide complexes [Ln(OAr(OMe))2(CCPh)(thf)2]. Oxidation of the divalent ytterbium aryloxide [Yb(OAr(OMe))2(thf)3] by Hg(CCPh)2 in thf gave the analogous [Yb(OAr(OMe))2(CCPh)(thf)2]. The erbium alkynide [Er(OAr(OMe))2(CCPh)(thf)2] x 0.25 C6H14 has distorted square-pyramidal stereochemistry with transoid OAr(OMe) and thf ligands in the basal plane and a rare (for Ln) terminal alkynide ligand in the apical position. The reactive Lu-C bond in the [Lu(OAr(OMe))2(CCPh)(thf)2] complexes could be slowly cleaved by free HOAr(OMe) in hydrocarbon solvents, yielding Lu(OAr(OMe))3 species and fortuitous partial hydrolysis of [Er(Ar(OMe))2(CCPh)(thf)2] gave the dimeric [Er(OAr(OMe))2(mu-OH)2]2. 相似文献
996.
McConnell AC Pogorzelec PJ Slawin AM Williams GL Elliott PI Haynes A Marr AC Cole-Hamilton DJ 《Dalton transactions (Cambridge, England : 2003)》2006,(1):91-107
2-Phosphanylethylcyclopentadienyl lithium compounds, Li[C(5)R'(4)(CH(2))(2)PR(2)] (R = Et, R' = H or Me, R = Ph, R' = Me), have been prepared from the reaction of spirohydrocarbons C(5)R'(4)(C(2)H(4)) with LiPR(2). C(5)Et(4)HSiMe(2)CH(2)PMe(2), was prepared from reaction of Li[C(5)Et(4)] with Me(2)SiCl(2) followed by Me(2)PCH(2)Li. The lithium salts were reacted with [RhCl(CO)(2)](2), [IrCl(CO)(3)] or [Co(2)(CO)(8)] to give [M(C(5)R'(4)(CH(2))(2)PR(2))(CO)] (M = Rh, R = Et, R' = H or Me, R = Ph, R' = Me; M = Ir or Co, R = Et, R' = Me), which have been fully characterised, in many cases crystallographically as monomers with coordination of the phosphorus atom and the cyclopentadienyl ring. The values of nu(CO) for these complexes are usually lower than those for the analogous complexes without the bridge between the cyclopentadienyl ring and the phosphine, the exception being [Rh(Cp'(CH(2))(2)PEt(2))(CO)] (Cp' = C(5)Me(4)), the most electron rich of the complexes. [Rh(C(5)Et(4)SiMe(2)CH(2)PMe(2))(CO)] may be a dimer. [Co(2)(CO)(8)] reacts with C(5)H(5)(CH(2))(2)PEt(2) or C(5)Et(4)HSiMe(2)CH(2)PMe(2) (L) to give binuclear complexes of the form [Co(2)(CO)(6)L(2)] with almost linear PCoCoP skeletons. [Rh(Cp'(CH(2))(2)PEt(2))(CO)] and [Rh(Cp'(CH(2))(2)PPh(2))(CO)] are active for methanol carbonylation at 150 degrees C and 27 bar CO, with the rate using [Rh(Cp'(CH(2))(2)PPh(2))(CO)] (0.81 mol dm(-3) h(-1)) being higher than that for [RhI(2)(CO)(2)](-) (0.64 mol dm(-3) h(-1)). The most electron rich complex, [Rh(Cp'(CH(2))(2)PEt(2))(CO)] (0.38 mol dm(-3) h(-1)) gave a comparable rate to [Cp*Rh(PEt(3))(CO)] (0.30 mol dm(-3) h(-1)), which was unstable towards oxidation of the phosphine. [Rh(Cp'(CH(2))(2)PEt(2))I(2)], which is inactive for methanol carbonylation, was isolated after the methanol carbonylation reaction using [Rh(Cp'(CH(2))(2)PEt(2))(CO)]. Neither of [M(Cp'(CH(2))(2)PEt(2))(CO)] (M = Co or Ir) was active for methanol carbonylation under these conditions, nor under many other conditions investigated, except that [Ir(Cp'(CH(2))(2)PEt(2))(CO)] showed some activity at higher temperature (190 degrees C), probably as a result of degradation to [IrI(2)(CO)(2)](-). [M(Cp'(CH(2))(2)PEt(2))(CO)] react with MeI to give [M(Cp'(CH(2))(2)PEt(2))(C(O)Me)I] (M = Co or Rh) or [Ir(Cp'(CH(2))(2)PEt(2))Me(CO)]I. The rates of oxidative addition of MeI to [Rh(C(5)H(4)(CH(2))(2)PEt(2))(CO)] and [Rh(Cp'(CH(2))(2)PPh(2))(CO)] are 62 and 1770 times faster than to [Cp*Rh(CO)(2)]. Methyl migration is slower, however. High pressure NMR studies show that [Co(Cp'(CH(2))(2)PEt(2))(CO)] and [Cp*Rh(PEt(3))(CO)] are unstable towards phosphine oxidation and/or quaternisation under methanol carbonylation conditions, but that [Rh(Cp'(CH(2))(2)PEt(2))(CO)] does not exhibit phosphine degradation, eventually producing inactive [Rh(Cp'(CH(2))(2)PEt(2))I(2)] at least under conditions of poor gas mixing. The observation of [Rh(Cp'(CH(2))(2)PEt(2))(C(O)Me)I] under methanol carbonylation conditions suggests that the rhodium centre has become so electron rich that reductive elimination of ethanoyl iodide has become rate determining for methanol carbonylation. In addition to the high electron density at rhodium. 相似文献
997.
Xiong G Joly AG Holtom GP Wang C McCready DE Beck KM Hess WP 《The journal of physical chemistry. B》2006,110(34):16937-16940
In this work alpha-Cr(2)O(3)/alpha-Fe(2)O(3) core-shell polycrystalline nanostructures were synthesized by using alpha-Cr(2)O(3) nanoparticles as seed crystals during aqueous nucleation. The formation of alpha-Fe(2)O(3) polycrystallites on alpha-Cr(2)O(3) surfaces was confirmed by X-ray diffraction, transmission electron microscopy, and energy-dispersive X-ray analysis. The excited-state relaxation dynamics of as-grown core-shell structures and "pure" alpha-Fe(2)O(3) particles of the same size were measured with femtosecond transient absorption spectroscopy. The results show the carrier lifetimes decay within a few picoseconds regardless of sample. This is likely due to fast recombination/trapping of carriers to defects and iron d-states. 相似文献
998.
Frank W. Crow Wayne K. Duholke Chad E. Hadden Richard F. Smith Thomas J. Thamann Brian D. Kaluzny David A. Hahn Christopher S. Mallory Kathleen A. Farley Gary E. Martin 《Journal of heterocyclic chemistry》1999,36(2):365-370
The rigorous structural characterization of novobiocin, is reported using mass spectrometric, infrared and nmr spectroscopic analysis. Complete nmr assignments are reported. Previous reports in the literature had left some quaternary carbon resonances unassigned. Isonovobiocin and decarbamylnovobiocin, although known in the literature for a number of years, have never been completely characterized. Mass spectrometric fragmentation pathways and complete 1H and 13C nmr assignments are reported for these congeners for the first time. The mass spectral fragmentation pathway and nmr assignments are also reported for 2″-(O-carbamyl)novobiocin although the nmr assignments at lower field were reported previously. The structural characterization of novobiocin-2″,3″-carbonate observed in the Test Assay procedure used for Novobiocin is reported for the first time. 相似文献
999.
Zacate Matthew O. Walsh Bonner C. Peng Luke S.-J. Collins Gary S. 《Hyperfine Interactions》2001,136(3-8):653-658
Fractions of indium solutes in each phase of a mixture of two binary phases were measured using perturbed angular correlation
of gamma rays. Measurements of phase fractions were made on Pd3Ga7–PdGa, PdGa–Pd5Ga3, and FeAl2–FeAl mixtures as a function of composition. The phase fractions were analyzed using a thermodynamic model that takes into
account differences between energies of solute atoms in the two phases. From the model, segregation coefficients were obtained
for the systems studied. Also, earlier measurements on Ni2Al3–NiAl were reanalyzed. Large differences are found among the segregation coefficients.
This revised version was published online in September 2006 with corrections to the Cover Date. 相似文献
1000.
Gary E. Martin Russell H. Robins Frank W. Crow Wayne K. Duholke Jane E. Guido Chad E. Hadden Brian D. Kaluzny Thomas J. Thamann Bruce A. Pearlman 《Journal of heterocyclic chemistry》1999,36(4):1107-1114
TipranavirTM (PNU-140690) is a protease inhibitor under clinical investigation for the treatment of human acquired immunodeficiency syndrome (AIDS). During scale-up synthesis of clinical quantities of the bulk drug, a colored, transient by-product of the final coupling reaction was observed. Quantities of this colored, transient chemical species were too low (<<0.1%) for characterization by conventional spectroscopic methods. It was, however, possible to isolate sufficient material for characterization based on mass spectrometry and submicro inverse-detection gradient (SMIDG) nmr methods by methanol stripping of silica gel that had been used in purification of bulk drug. This process afforded an enriched feedstock from which small quantities of this highly colored and unstable (halflife < 18 hours in methanol and < 10 minutes in acetone) trace contaminant could be isolated by semi preparative reversed phase hplc. The impurity was identified as an unstable Zincke salt formed by the condensation of two molecules of the anilino precursor and the pyridine used as a base in the final step of the synthetic process. Following identification of this impurity, efforts were undertaken to engineer it out of the synthetic process. 相似文献