Increased fraction of low-density structures in aqueous solutions of fluoride

X-ray absorption spectroscopy (XAS) and small angle x-ray scattering (SAXS) were utilized to study the effect of fluoride (F(-)) anion in aqueous solutions. XAS spectra show that F(-) increases the number of strong H-bonds, likely between F(-) and water in the first hydration shell. SAXS data show a low-Q scattering intensity increase similar to the effect of a temperature decrease, suggesting an enhanced anomalous scattering behavior in F(-) solutions. Quantitative analysis revealed that fluoride solutions have larger correlation lengths than chloride solutions with the same cations but shorter compared to pure water. This is interpreted as an increased fraction of tetrahedral low-density structures in the solutions due to the presence of the F(-) ions, which act as nucleation centers replacing water in the H-bonding network and forming stronger H-bonds, but the presence of the cations restricts the extension of strong H-bonds.     

Synthetic training sets for the development of discriminant functions for the detection of volatile organic compounds from passive infrared remote sensing data

A novel synthetic data generation methodology is described for use in the development of pattern recognition classifiers that are employed for the automated detection of volatile organic compounds (VOCs) during infrared remote sensing measurements. The approach used is passive Fourier transform infrared spectrometry implemented in a downward-looking mode on an aircraft platform. A key issue in developing this methodology in practice is the need for example data that can be used to train the classifiers. To replace the time-consuming and costly collection of training data in the field, this work implements a strategy for taking laboratory analyte spectra and superimposing them on background spectra collected from the air. The resulting synthetic spectra can be used to train the classifiers. This methodology is tested by developing classifiers for ethanol and methanol, two prevalent VOCs in wide industrial use. The classifiers are successfully tested with data collected from the aircraft during controlled releases of ethanol and during a methanol release from an industrial facility. For both ethanol and methanol, missed detections in the aircraft data are in the range of 4 to 5%, with false positive detections ranging from 0.1 to 0.3%.     

Cross-coupling of mesylated phenol derivatives with potassium alkoxymethyltrifluoroborates

Cross-coupling of mesylated phenol derivatives with various potassium alkoxymethyltrifluoroborates has been achieved. The corresponding aryl and heteroaryl alkoxymethyl compounds have been obtained with equal facility with both electron-rich and electron-poor substituents on the activated alcohol.     

‘Fixed charge’ chemical derivatization and data dependant multistage tandem mass spectrometry for mapping protein surface residue accessibility

Protein surface accessible residues play an important role in protein folding, protein-protein interactions and protein-ligand binding. However, a common problem associated with the use of selective chemical labeling methods for mapping protein solvent accessible residues is that when a complicated peptide mixture resulting from a large protein or protein complex is analyzed, the modified peptides may be difficult to identify and characterize amongst the largely unmodified peptide population (i.e., the ‘needle in a haystack’ problem). To address this challenge, we describe here the development of a strategy involving the synthesis and application of a novel ‘fixed charge’ sulfonium ion containing lysine-specific protein modification reagent, S,S′-dimethylthiobutanoylhydroxysuccinimide ester (DMBNHS), coupled with capillary HPLC-ESI-MS, automated CID-MS/MS, and data-dependant neutral loss mode MS³ in an ion trap mass spectrometer, to map the surface accessible lysine residues in a small model protein, cellular retinoic acid binding protein II (CRABP II). After reaction with different reagent:protein ratios and digestion with Glu-C, modified peptides are selectively identified and the number of modifications within each peptide are determined by CID-MS/MS, via the exclusive neutral loss(es) of dimethylsulfide, independently of the amino acid composition and precursor ion charge state (i.e., proton mobility) of the peptide. The observation of these characteristic neutral losses are then used to automatically ‘trigger’ the acquisition of an MS³ spectrum to allow the peptide sequence and the site(s) of modification to be characterized. Using this approach, the experimentally determined relative solvent accessibilities of the lysine residues were found to show good agreement with the known solution structure of CRABP II.     

Biosynthesis of Indigo Dye by Newly Isolated Naphthalene-Degrading Strain <Emphasis Type="Italic">Pseudomonas s</Emphasis>p. HOB1 and its Application in Dyeing Cotton Fabric

Indigo is one of the oldest dyes manufactured chemically and is mostly used in textile, food, and pharmaceutical industries. However, owing to the environmental hazards posed by the chemical production, the present scenario in the field stipulates a biosynthesis alternative for indigo production. The present study describes an indigenously isolated naphthalene-degrading strain Pseudomonas sp. HOB1 producing a blue pigment when indole was added in the growth medium. This blue pigment was analyzed by high-pressure thin-layer chromatography and other spectroscopic techniques which revealed it to be the indigo dye. Pseudomonas sp. HOB1 showed ability to produce 246 mg indigo liter⁻¹ of the medium. The K _m for the enzyme naphthalene dioxygenase which is involved in indigo formation is 0.3 mM, and V _max was as high as 50 nmol min⁻¹ mg dry biomass⁻¹. The bacterial indigo dye was further successfully applied for dyeing cotton fabrics. The high indigo productivity of Pseudomonas sp. HOB1 using naphthalene as growth substrate and its applicability on cotton fabrics, therefore, stems the probability of using this culture for commercial indigo production.     

Optically transparent superhydrophobic TEOS-derived silica films by surface silylation method

Optically transparent silica films were prepared at room temperature (~27°C) by keeping the molar ratio of TEOS:MeOH:H₂O (0.001 M NH₄F) constant at 1:19.29:6.20, respectively. A surface chemical modification of the films was done with alkylchlorosilanes at different concentrations from 0 to 1 vol. % and aging times varied from half to 2 h. The DMCS and TMCS surface modified silica films showed the static water contact angle of 146° and 162°, respectively. When the DMCS and TMCS modified films were cured at temperatures higher than 240 and 275°C, respectively, the films became superhydrophilic. Further, the humidity study was carried out at a relative humidity of 90% at 30°C temperature over 60 days. We characterized the water repellent silica films by Fourier transform infrared spectroscopy, scanning electron microscopy, atomic force microscopy, % of optical transmission, humidity tests and contact angle measurements.     

Single-Chain Fv Antibody Fragments Retain Binding Properties of the Monoclonal Antibody Raised Against Peptide P1 of the Human Prion Protein

Prion diseases are incurable neurodegenerative diseases that affect both humans and animals. The infectious agent is a pathogenic form of the prion protein that accumulates in brain as amyloids. Currently, there is neither cure nor reliable preclinical diagnostics on the market available. The growing number of reports shows that passive immunisation is one of the most promising strategies for prion disease therapy, where antibodies against prions may prevent and even cure the infection. Since antibodies are large molecules and, thus, might not be suitable for the therapy, different antibody fragments are a good alternative. Therefore, we have designed and prepared single-chain antibody fragments (scFvs) derived from the PrP^Sc-specific murine monoclonal antibody V5B2. Using a new expression vector pMD204, we produced scFvs in two opposing chain orientations in the periplasm of Escherichia coli. Both recombinant antibody fragments retained the specificity of the parent antibody and one of these exhibited binding properties comparable to the corresponding murine Fab fragments with the affinity in nM range. Our monovalent antibody fragments are of special interest in view of possible therapeutic reagents for prion diseases as well as for development of a new generation of diagnostics.     

DMA analysis and wood bonding of PVAc latex reinforced with cellulose nanofibrils

Suspensions of commercial refined beech pulp (RBP) were further processed through mechanical disintegration (MD-RBP), chemical modification (CM-RBP) and through chemical modification followed by mechanical disintegration (CM-MD-RBP). Nanocomposites were prepared by compounding a poly(vinyl acetate) (PVAc) latex adhesive with increasing contents of the different types of nanofibrils, and the resulting nanocomposites were analyzed by dynamic mechanical analysis (DMA). Also, the suitability of using the CM-RBP fibrils to formulate PVAc adhesives for wood bonded assemblies with improved heat resistance was studied. The presence of cellulose nanofibrils had a strong influence on the viscoelastic properties of PVAc latex films. For all nanocomposites, increasing amounts of cellulose nanofibrils (treated or untreated) led to increasing reinforcing effects in the glassy state, but especially in the PVAc and PVOH glass transitions. This reinforcement primarily resulted from interactions between the cellulose fibrils network and the hydrophilic PVOH matrix that led to the complete disappearance of the PVOH glass transition (tan δ peak) for some fibril types and contents. At any given concentration in the PVOH transition, the CM-MD-RBP nanofibrils provided the highest reinforcement, followed by the MD-RBP, CM-RBP and the untreated RBP. Finally, the use of the CM-RBP fibrils to prepare PVAc reinforced adhesives for wood bonding was promising since, even though they generally performed worse in dry and wet conditions, the boards showed superior heat resistance (EN 14257) and passed the test for durability class D1.     

1,7′-dimethyl-2′-propyl-1<Emphasis Type="Italic">H</Emphasis>,3′<Emphasis Type="Italic">H</Emphasis>-2,5′-bibenzo[<Emphasis Type="Italic">d</Emphasis>]imidazole as a corrosion inhibitor of mild steel in 1 M HCl

Inhibition effect of imidazole derivative 1,7′-dimethyl-2′-propyl-1H,3′H-2,5′-bibenzo[d]imidazole (DPBI) against mild steel corrosion in 1 M HCl solutions was evaluated using the conventional mass loss method, potentiodynamic polarization, linear polarization, and electrochemical impedance spectroscopy. The mass loss results showed that DPBI is an excellent corrosion inhibitor; electrochemical polarizations data revealed the mixed mode of inhibition; and the results of electrochemical impedance spectroscopy showed that the change in the impedance parameters, charge transfer resistance, and double layer capacitance with the change in the concentration of the inhibitor is due to the adsorption of the molecule leading to the formation of a protective layer on the surface of mild steel. The inhibition action of this compound was assumed to occur via adsorption on the steel surface through the active centers of the molecule.     

Synthesis of a fluorescein–porphyrin hybrid and its supramolecular self-assembly with amino-porphyrinatocopper(II) by hydrogen bonding

A fluorescein–porphyrin hybrid (Fl-PTPP) has been synthesized and characterized by UV/Vis, IR, ¹H NMR, ES-MS and elemental analysis. The supramolecular self-assembly of Fl-PTPP with the copper(II) complex of 5-(p-amino-phenyl)-10,15,20-triphenylporphyrin, (CuAPTPP), by hydoxyl-amino type hydrogen bonding was studied using vapor pressure osmometry (VPO) measurements, ES-MS, UV/Vis, ¹H NMR and fluorescence spectroscopic titration. The data indicate formation of a (Fl-PTPP)–CuAPTPP supramolecular complex. Fluorescence strengthening character was observed in a spectroscopic titration experiment for the Fl-PTPP/CuAPTPP system. The association constant of the supramolecular complex was calculated from the fluorescence titration data, and found to be less than that of a carboxyl–carboxyl type hydrogen-bonding system.