Kraftfeldrechnungen an linearen Oligopyrrolen: 2,2′-Bipyrrol, 2,2′-Furylpyrrol und Prodigiosen

Using a specific force field model, relative stabilities of 2,2-bipyrrole and 2,2-furylpyrrole conformers as well as of prodigiosene tautomers, configurations, and conformations, are studied. 2,2-Bipyrrole adopts anantiperiplanar conformation in accord with other theoretical calculations and experimental findings. Its rotational barrier calculated by this method compares favourably to the one derived by other means. For the parent prodigiosene the (Z)sp,sp arrangement is found to be the most stable one. The two possible tautomers within its dipyrrin fragment do not show a significant energy difference.

     

Cyclic PNA-based compound directed against HIV-1 TAR RNA: modelling, liquid-phase synthesis and TAR binding

A cyclic molecule including a hexameric PNA sequence has been designed and synthesized in order to target the TAR RNA loop of HIV-1 through the formation of a "kissing complex". For comparison, its linear analogue has also been investigated. The synthesis of the cyclic and linear PNA has been accomplished following a liquid-phase strategy using mixed PNA and fully N-protected (aminoethylglycinamide) fragments. The interactions of this cyclic PNA and its linear analogue with TAR RNA have been studied and the results indicate clearly that no interaction occurs between the cyclic antisense PNA and TAR RNA, whereas a tenuous interaction has been detected with its linear PNA analogue.     

Role of catechin on collagen type I stability upon oxidation: a NMR approach

Abstract

The study focuses on the understanding, at molecular level, the mechanism of interaction between protein and flavonoids. Collagen and catechin interactions were investigated by NMR in solution and solid state. The effect of catechin on the stability of collagen to oxidation was also explored. Collagen was treated with two concentrations of catechin solutions. Oxidation was carried out by incubation of collagen solution with three oxidation systems: Fe(II)/H₂O₂, Cu(II)/H₂O₂, and NaOCl/H₂O₂. The effects of oxidation systems were evaluated by high resolution 1?D and 2?D proton spectroscopy and solid state NMR (¹³C CP MAS) experiments. Interactions between collagen and catechin preferentially occur between catechin B ring and the amino acids Pro and Hyp of collagen. Results showed that both iron and copper oxidation systems were able to interact with collagen by site specific attack. Moreover, catechin protects collagen proline from oxidation by metal/H₂O₂ systems, preventing copper and iron approach to collagene molecule;this behaviour was more evident for the copper/H₂O₂ system.     

Spectrophotometric determination of molybdenum based on charge transfer complex in PVA medium

A very simple, selective and sensitive method was developed for the spectrophotometric determination of Mo in the presence of W. The method was based on the formation of color charge transfer complex, molybdotungstophosphate-3,3',5,5'-tetramethylbezidine anion, which was solubilized and stabilized in PVA medium. Following the recommended procedure, molybdenum could be determined in the linear range of 0.04-2.5 mug ml(-1) and the molar absorptivity was 1.47x10(4) l mol(-1) cm(-1) at 660 nm. The proposed method had been applied to the determination of trace molybdenum in tungsten ore with satisfactory results.     

Single electron traps at the surface of polycrystalline MgO: assignment of the main trapping sites

Paramagnetic centers at the surface of ionic oxides in the form of trapped electrons can be generated by exposure of the material to alkali metal or hydrogen atoms or of molecular hydrogen under UV irradiation. For many years, it has been assumed that the resulting paramagnetic centers consist of oxygen vacancies filled by one electron. High-resolution electron spin resonance spectra and ab initio quantum chemical calculations show that the paramagnetic centers consist of (H(+))(e(-)) electron pairs formed at morphological irregularities of the surface. At least three different kinds of (H(+))(e(-)) centers, [A], [B], and [C], have been identified with abundances of 80%, 10%, and 8%, respectively. In this work, we compare a wide set of measured and computed g-factors and hyperfine coupling constants of the unpaired electron with the surrounding (25)Mg, (17)O, and (1)H nuclei and we propose a general assignment of the centers. (H(+))(e(-)) pairs formed at Mg(4c) ions at steps and edges account for species [A], centers formed at Mg(4c) ions at reverse corners correspond to species [B], and species [C] originates from (H(+))(e(-)) pairs formed at Mg(3c) ions at corners and kinks.     

Physically based molecular device model in a transient circuit simulator

Two efficient, physically based models for the real-time simulation of molecular device characteristics of single molecules are developed. These models assume that through-molecule tunnelling creates a steady-state Lorentzian distribution of excess electron density on the molecule and provides for smooth transitions for the electronic degrees of freedom between the tunnelling, molecular-excitation, and charge-hopping transport regimes. They are implemented in the fREEDA™ transient circuit simulator to allow for the full integration of nanoscopic molecular devices in standard packages that simulate entire devices including CMOS circuitry. Methods are presented to estimate the parameters used in the models via either direct experimental measurement or density-functional calculations. The models require 6–8 orders of magnitude less computer time than do full a priori simulations of the properties of molecular components. Consequently, molecular components can be efficiently implemented in circuit simulators. The molecular-component models are tested by comparison with experimental results reported for 1,4-benzenedithiol.     

Identification of the pathological prion protein allotypes in scrapie-infected heterozygous bank voles (Clethrionomys glareolus) by high-performance liquid chromatography-mass spectrometry

Cerebral formation of the pathological isoform of the prion protein (PrP) is a crucial molecular event in prion diseases. The bank vole (Clethrionomys glareolus) is a rodent species highly susceptible to natural scrapie. The PrP gene of bank vole is polymorphic (Met/Ile) at codon 109. Here we show that homozygous 109Met/Met voles have incubation times shorter than heterozygous 109Met/Ile voles after experimental challenge with three different scrapie isolates. An HPLC-MS/MS method was optimized and applied to investigate whether in heterozygous animals both PrP allotypes are able to undergo pathological conversion. The results demonstrate that both allotypes of the prion protein participate to pathological deposition.     

Electroenzymatic reactions. Investigation of a reductive dehalogenase by means of electrogenerated redox cosubstrates

As an illustration of how cyclic voltammetry can be used to unravel the mechanisms and kinetics of redox enzymes, the reductive dechlorination of trichloroethylene and tetrachloroethylene by a typical reductive dehalogenase, the tetrachloroethene reductive dehalogenase of Sulfurospirillum multivorans (formerly called Dehalospirillum multivorans), was investigated by means of several electrochemically generated cosubstrates. They comprised the monocation and the neutral form of methylviologen, the neutral form of benzylviologen, and cobaltocene. Cyclic voltammetry is used to produce the active form of the cosubstrate under controlled potential conditions. It shows large plateau-shaped catalytic responses, which are used to measure the kinetics of the enzymatic reaction as a function of the substrate and cosubstrate concentrations. The variation of the rate constant for the cosubstrate reaction with its standard potential shows the transition between two asymptotic behaviors, one in which the reaction is under diffusion control and the other in which it is under counter-diffusion control. Simple fitting of this plot allows an estimation of the standard potential of the electron acceptor center in the enzyme (E degrees = -0.57 V vs NHE).