THE MECHANISM OF ENERGY TRANSFER FROM POLY-p-BENZOYLPHENYLACETIMIDO-BOVINE SERUM ALBUMIN TO SMALL-MOLECULE QUENCHERS

Abstract— Results of a quantitative photochemical study of poly- p -benzoylphenylacetimido-bovine serum albumin in the presence of small-molecule triplet quenchers are reported. The efficiency of quenching by organic salts containing low triplet energy chromophores is shown to be qualitatively dependent on their predicted association constants to the modified protein. In addition, quenching is inhibited by salts of organic acids which possess high binding affinities for the protein but do not contain chromophores of low triplet energy. Quantitative treatment of the quenching and inhibition data yields results which strongly support the operation of an 'affinity controlled' mechanism for triplet energy transfer from the benzophenone moieties of the modified-bovine serum albumin to quenchers such as α-naphthylacetate and trans -cinnamate.     

Strong coupling expansion for classical statistical dynamics

We discuss the simple, randomly driven systemdx/dt = –x –x³ +f(t), wheref(t) is a Gaussian random function or stirring force with f(t)f(t) = (t – t). We show how to obtain approximately the coefficients of the expansion of the equal-time Green's functions as power series in (1/R)ⁿ, whereR is the internal Reynolds number ()^1/2/, by using a new expansion for the path integral representation of the generating functional for the correlation functions. Exploiting the fact that the action for the randomly driven system is related to that of a quantum mechanical anharmonic oscillator with Hamiltonianp ²/2 +m ² x ²/2 +vx ⁴ +x ⁶/2, we evaluate the path integral on a lattice by assuming that thex ⁶ term dominates the action. This gives an expansion of the lattice theory Green's functions as power series in 1/(a)^1/3, wherea is the lattice spacing. Using Padé approximants to extrapolate toa = 0, we obtain the desired large-Reynolds-number expansion of the two-point function.Supported financially by the National Science Foundation and the U.S. Department of Energy.     

The alternating basis algorithm for assignment problems

The purpose of this paper is to present a new primal extreme point algorithm for solving assignment problems which both circumvents and exploits degeneracy. The algorithm is based on the observation that the degeneracy difficulties of the simplex method result from the unnecessary inspection of alternative basis representations of the extreme points. This paper characterizes a subsetQ of all bases that are capable of leading to an optimal solution to the problem if one exists. Using this characterization, an extreme point algorithm is developed which considers only those bases inQ. Computational results disclose that the new algorithm is substantially more efficient than previously developed primal and primal-dual extreme point (simplex) methods for assignment problems.     

Preparation and electrochemical behavior of dimeric complexes of Ru2(III12, III12) and Ru2(IV,IV) formed by oxidative dimerization of [RuIII(edta)OH2]−

Electrochemical or chemical oxidation of [Ru^III(edta)OH₂]^? proceeds in successive half- and one-electron steps to yield dimeric complexes of Ru(III$\text{1}\text{2}$) and Ru(IV) believed to contain oxo- or dihydroxo-bridging ligands. Spectral and electrochemical properties of the complexes prepared by oxidative dimerization are described and compared with previous reports of dioxygen and peroxo complexes of Ru^III(edta). The dimeric Ru^IV(edta) complex is shown to exhibit modest activity as a catalyst for the oxidation of water to dioxygen.     

Integral equation theory for two-dimensional polymer melts

The polymer reference interaction site model theory is investigated for two-dimensional polymer melts composed of freely-jointed hard disk chains and tangent-disk rods. Exact results for the intramolecular pair correlation functions are input into the theory, and predictions of the theory for the intermolecular pair correlation functions are tested via comparison with simulation. The theory is not as accurate for this system as it is for three-dimensional polymer melts, and the quantitative predictions are not good except at the highest area fractions. Possible reasons for the deficiency in the theory are discussed.     

Capillary electrochromatography of peptides on microfabricated poly(dimethylsiloxane) chips modified by cerium(IV)-catalyzed polymerization

Ceramides are important intracellular second messengers that play a role in the regulation of cell growth, differentiation and programmed cell death. Qualitative and quantitative analysis of these second messengers requires sensitive and specific analytical methods to detect endogenous levels of individual ceramide species and to differentiate between them. Nine synthetic ceramides were separated by liquid chromatography coupled to tandem mass spectrometry on a C18 bonded silica column. The lipids were eluted in gradient elution mode using a mixture of water, acetonitrile and 2-propanol as mobile phase. They were detected by reaction monitoring performed on positive ion electrospray generated ions. Collision-induced fragmentations conducted on ceramides produced a well characteristic product ion at m/z 264, making multiple reaction monitoring (MRM) well suited for various ceramides quantitative measurements. After optimization of the extraction step, the proposed methodology was able to identify and quantify different ceramide species issued from human cancer cells. The method could be validated for C16, C18 and C20 ceramides, quantified at the nanogram level. The validation exhibits good results with respect to linearity, accuracy and precision.     

Chemoenzymatic Synthesis of Glycopeptides with PglB, a Bacterial Oligosaccharyl Transferase from Campylobacter jejuni

The gram-negative bacterium Campylobacter jejuni has a general N-linked glycosylation pathway encoded by the pgl gene cluster. One of the proteins in this cluster, PglB, is thought to be the oligosaccharyl transferase due to its significant homology to Stt3p, a subunit of the yeast oligosaccharyl transferase complex. PglB has been shown to be involved in catalyzing the transfer of an undecaprenyl-linked heptasaccharide to the asparagine side chain of proteins at the Asn-X-Ser/Thr motif. Using a synthetic disaccharide glycan donor (GalNAc-α1,3-bacillosamine-pyrophosphate-undecaprenyl) and a peptide acceptor substrate (KDFNVSKA), we can observe the oligosaccharyl transferase activity of PglB in vitro. Furthermore, the preparation of additional undecaprenyl-linked glycan variants reveals the ability of PglB to transfer a wide variety of saccharides. With the demonstration of PglB activity in vitro, fundamental questions surrounding the mechanism of N-linked glycosylation can now be addressed.     

Determination of isotopic thorium in biological samples by combined alpha-spectrometry and neutron activation analysis

The determination of isotopic thorium by alpha-spectrometric methods is a routine practice for bioassay and environmental measurement programs. Alpha-spectrometry has excellent detection limits (by mass) for all isotopes of thorium except²³²Th due to its extremely long half-life. This paper reports a pre-concentration neutron activation analysis (PCNAA) method for²³²Th that may be performed following alpha-spectrometry if a suitable source preparation material is utilized. Human tissues and other samples were spiked with²²⁹Th and the thorium was isolated from the sample using ion exchange chromatography. The thorium was then electrodeposited from a sulfate-based medium onto a vanadium planchet, counted by alpha-spectrometry, and then analyzed for²³²Th by neutron activation analysis. The radiochemical yield was determined from the alpha-spectrometric method. Detection limits for²³²Th by this PCNAA method are approximately 50 times lower than achieved by alphaspectrometry.     

Isomeric characterization via ion neutralization and dissociation. Experimental variables

Major deficiencies of mass spectrometry for characterizing isomeric molecules, and of collisionally activated dissociation for characterizing isomeric ions, can be alleviated by complementary information from new techniques of neutraiization-reionization (NR) mass spectrometry. Mass data can be obtained from most fragments of the original species, irrespective of their ability to retain the charge; dissociation of fast neutrals prepared from isomeric ions can involve novel reaction pathways and can minimize competing isomerization reactions; isomeric neutrals undergoing similar dissociations can be differentiated by forming them with different internal energies; reionization of the neutral products to negative as well as positive ions can provide increased selectivity; and structural information on the resulting ions can be derived using MS/MS/MS, Dissociation by novel non-isomerization pathways can also be effected by a second addition (or subtraction) of an electron to produce an unstable ion of opposite charge. Special techniques can yield neutralized products in favorable dissociative states by collisional activation, by using neutralization targets of selected ionization energy, or through Franck-Condon factors. Optimum excitation of the neutral is important, as this should be high enough to minimize rearrangement, to maximize the differences in the dissociation pathways of isomers, and to minimize the further dissociation of the characteristic primary products of the neutral. NR experiments can, thus, also provide information on the energy surfaces for unimolecular dissociations of neutrals that are difficult to study by conventional techniques. Dissociations of the neutrals can be differentiated from those occurring after reionization by separate collisional activation of the neutrals, by changing the ionization energy of the neutralization agent, or by reionization to ions of opposite charge.     

A non-isothermal kinetic study of the thermal decomposition of magnesium alkoxides and amides

The thermal decomposition of alkoxides and amides of magnesium have been studied by vacuum TGA under both isothermal and non-isothermal conditions. These compounds were found to follow a unimolecular decay law, which in integrated form is ln(1  α)  kt, where α is the fraction of material reacted, and k is the Arrhenius rate constant. The rate-controlling process is random nucleation, one nucleus on each particle. Energies of activation calculated by isothermal and non-isothermal methods agree to within ±20%.