CPMD Simulation of a Bimolecular Chemical Reaction: Nucleophilic Attack of a Disulfide Bond under Mechanical Stress

Previous single‐molecule atomic force microscopy (AFM) experiments showed a change in the reactivity of a bimolecular substitution reaction with a definite force acting on a protein containing disulfide bonds. Using Car–Parrinello molecular dynamics (CPMD) simulations, we analyse the relevant reaction pathways for the breaking of a disulfide bond in the presence of nucleophiles.     

Structural Basis for Copper–Oxygen Mediated C−H Bond Activation by the Formylglycine-Generating Enzyme

The formylglycine-generating enzyme (FGE) is a unique copper protein that catalyzes oxygen-dependent C−H activation. We describe 1.66 Å- and 1.28 Å-resolution crystal structures of FGE from Thermomonospora curvata in complex with either Ag^I or Cd^II providing definitive evidence for a high-affinity metal-binding site in this enzyme. The structures reveal a bis-cysteine linear coordination of the monovalent metal, and tetrahedral coordination of the bivalent metal. Similar coordination changes may occur in the active enzyme as a result of Cu^I/II redox cycling. Complexation of copper atoms by two cysteine residues is common among copper-trafficking proteins, but is unprecedented for redox-active copper enzymes or synthetic copper catalysts.     

Time and frequency domain finite element implementation of a fully anisotropic linear visco-elastic model

Consistent time and frequency domain formulations for a fully anisotropic, linear visco-elastic material model are presented. The finite element implementation leads to a complex valued stiffness matrix in the frequency domain. A homogenisation procedure based on unit-cell analyses in the frequency domain is presented to derive input parameters for the material model. (© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Metalloid Cluster Compounds of Group 14: Bonding Properties and Subsequent Reactions

Abstract

Metalloid cluster compounds of group 14 of the general formulae E_nR_m with n > m (E = Si, Ge, Sn, Pb; R = ligand), where naked as well as ligand bound tetrel atoms are present, represent a novel class of cluster compounds in group 14 chemistry and can be seen as intermediates on the way to the elemental state. Therefore, interesting properties are expected for these compounds, which might complement results from nanotechnology. In this article, first results for germanium are discussed, together with novel build-up reactions on the way to novel materials based on metalloid cluster compounds.

GRAPHICAL ABSTRACT