Combining electronic properties and virtual screening for the development of new antioxidants: Trolox-like compounds as application example

Oxidative stress is an imbalance between the production of free radicals and the antioxidant defenses of the organism. Heart diseases, anemia, inflammation, and neurodegenerative disorders have been associated with this biological condition. Trolox is a notable antioxidant drug similar to vitamin E, and it is used to decrease the oxidative stress or repair the damage caused by it. In this work, the virtual screening technique is applied to identify compounds with antioxidant activities similar to Trolox. The antioxidant activity of these compounds was assessments by the mechanisms of hydrogen atom transfer and single electron transfer. Properties such as bond dissociation enthalpy, adiabatic ionization potential, Gibbs free reaction energy, spin density, highest occupied molecular orbital (HOMO), and GAP (HOMO-LUMO) energies, obtained from the DFT approach, point out to the predominance of the HAT mechanism for the antioxidant action of these compounds. The obtained results contribute to a better understanding of the chemical and physical properties responsible for antioxidant activity and the design of new antioxidant agents.     

Experimental Evidence of CO2 Photoreduction Activity of SnO2 Nanoparticles

Tin dioxide (SnO₂) has intrinsic characteristics that do not favor its photocatalytic activity. However, we evidenced that surface modification can positively influence its performance for CO₂ photoreduction in the gas phase. The hydroxylation of the SnO₂ surface played a role in the CO₂ affinity decreasing its reduction potential. The results showed that a certain selectivity for methane (CH₄), carbon monoxide (CO), and ethylene (C₂H₄) is related to different SnO₂ hydrothermal annealing. The best performance was seen for SnO₂ annealed at 150 °C, with a production of 20.4 μmol g⁻¹ for CH₄ and 16.45 μmol g⁻¹ for CO, while for SnO₂ at 200 °C the system produced more C₂H₄, probably due to a decrease of surface −OH groups.     

Full-dimensional analytical ab initio potential energy surface of the ground state of HOI

Extensive ab initio calculations using a complete active space second-order perturbation theory wavefunction, including scalar and spin-orbit relativistic effects with a quadruple-zeta quality basis set were used to construct an analytical potential energy surface (PES) of the ground state of the [H, O, I] system. A total of 5344 points were fit to a three-dimensional function of the internuclear distances, with a global root-mean-square error of 1.26 kcal mol(-1). The resulting PES describes accurately the main features of this system: the HOI and HIO isomers, the transition state between them, and all dissociation asymptotes. After a small adjustment, using a scaling factor on the internal coordinates of HOI, the frequencies calculated in this work agree with the experimental data available within 10 cm(-1).     

Formation of self-assembled chains of tetrathiafulvalene on a Cu(100) surface

Formation of self-assembled chains of tetrathiafulvalene (TTF) on the Cu(100) surface has been investigated by scanning tunneling microscopy and density functional theory calculations that include semiempirical van der Waals (vdW) interaction corrections. The calculations show that the chain structures observed in the experiments can only be explained by including the vdW interactions. The molecules are tilted along the chain in order to achieve maximal intermolecular interaction. The chains are metastable on the surface, which is consistent with the experimental observation that they disappear after annealing. The fact that all TTF chains observed in the experiment are short might be possibly explained by the interplay between the stabilizing vdW molecule-molecule interaction and the destabilizing rearrangement of surface atoms due to the strong molecule-substrate interaction.     

Theoretical and experimental studies on the carbon-nanotube surface oxidation by nitric acid: interplay between functionalization and vacancy enlargement

The nitric acid oxidation of multiwalled carbon nanotubes leading to surface carboxylic groups has been investigated both experimentally and theoretically. The experimental results show that such a reaction involves the initial rapid formation of carbonyl groups, which are then transformed into phenol or carboxylic groups. At room temperature, this reaction takes place on the most reactive carbon atoms. At higher temperatures a different mechanism would operate, as evidenced by the difference in activation energies. Experimental data can be partially related to first-principles calculations, showing a multistep functionalization mechanism. The theoretical aspects of the present article have led us to propose the most efficient pathway leading to carboxylic acid functional groups on the surface. Starting from mono-vacancies, it ends up with the synergistic formation of dangling -COOH groups and the enlargement of the vacancies.     

Ionic liquids as recycling solvents for the synthesis of magnetic nanoparticles

This work describes an easy synthesis (one pot) of MFe(2)O(4) (M = Co, Fe, Mn, and Ni) magnetic nanoparticles MNPs by the thermal decomposition of Fe(Acac)(3)/M(Acac)(2) by using BMI·NTf(2) (1-n-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide) or BMI·PF(6) (1-n-butyl-3-methylimidazolium hexafluorophosphate) ionic liquids (ILs) as recycling solvents and oleylamine as the reducing and surface modifier agent. The effects of reaction temperature and reaction time on the features of the magnetic nanomaterials (size and magnetic properties) were investigated. The growth of the MNPs is easily controlled in the IL by adjusting the reaction temperature and time, as inferred from Fe(3)O(4) MNPs obtained at 150 °C, 200 °C and 250 °C with mean diameters of 8, 10 and 15 nm, respectively. However, the thermal decomposition of Fe(Acac)(3) performed in a conventional high boiling point solvent (diphenyl ether, bp 259 °C), under a similar Fe to oleylamine molar ratio used in the IL synthesis, does not follow the same growth mechanism and rendered only smaller NPs of 5 nm mean diameter. All MNPs are covered by at least one monolayer of oleylamine making them readily dispersible in non-polar solvents. Besides the influence on the nanoparticles growth, which is important for the preparation of highly crystalline MNPs, the IL was easily recycled and has been used in at least 20 successive syntheses.     

Microwave-assisted domino access to C2-chain functionalized furans from tertiary propargyl vinyl ethers

Tertiary propargyl vinyl ethers armed with an electron-withdrawing group (amide or ester) at the tertiary propargylic position have been efficiently transformed into trisubstituted C(2)-chain functionalized furans. The metal-free domino transformation involves a microwave-assisted tandem [3,3]-propargyl Claisen rearrangement/5-exo-dig O-cyclization reaction. The manifold can be performed in a one-pot fashion from the primary components (1,2-ketoester/1,2-ketoamide or tertiary propargyl alcohols).     

Calculation of Kinetic Parameters for Crystallization Processes

In this work, kinetic data of crystallization processes have been determined by measurement of the intensities of reflection of X-ray diffraction spectra and modeled using the Avrami-Eroféev and Jander expressions. We have created a simple Microsoft Excel spreadsheet that allows students to calculate the kinetic data. Students will be able to calculate the kinetic parameters of any crystallization process, for example, hydrothermal crystallization of catalytic materials like zeolites. The possibility of using the spreadsheet with different models or expressions and discriminating among them is also validated by comparing the model results with experimental data (differential thermal analyses, DTA) from papers available in the recent literature.     

[Pd(Fmes)2(tmeda)]: A Case of Intermittent C?H⋅⋅⋅F?C Hydrogen‐Bond Interaction in Solution

The X‐ray structure of the title compound [Pd(Fmes)₂(tmeda)] (Fmes=2,4,6‐tris(trifluoromethyl)phenyl; tmeda=N,N,N′,N′‐tetramethylethylenediamine) shows the existence of uncommon C? H???F? C hydrogen‐bond interactions between methyl groups of the TMEDA ligand and ortho‐CF₃ groups of the Fmes ligand. The ¹⁹F NMR spectra in CD₂Cl₂ at very low temperature (157 K) detect restricted rotation for the two ortho‐CF₃ groups involved in hydrogen bonding, which might suggest that the hydrogen bond is responsible for this hindrance to rotation. However, a theoretical study of the hydrogen‐bond energy shows that it is too weak (about 7 kJ mol^?1) to account for the rotational barrier observed (ΔH^≠=26.8 kJ mol^?1), and it is the steric hindrance associated with the puckering of the TMEDA ligand that should be held responsible for most of the rotational barrier. At higher temperatures the rotation becomes fast, which requires that the hydrogen bond is continuously being split up and restored and exists only intermittently, following the pulse of the conformational changes of TMEDA.     

Proton‐Assisted Hydrogen Activation on Polyhedral Cations

The treatment of [1,1‐(PR₃)₂‐3‐(Py)‐closo‐1,2‐RhSB₉H₈] (PR₃=PMe₃ ( 2 ) or PPh₃ and PMe₃ ( 3 ); Py=pyridine) with triflic acid (TfOH) affords [1,3‐μ‐(H)‐1,1‐(PR₃)₂‐3‐(Py)‐1,2‐RhSB₉H₈]⁺ (PR₃=PMe₃ ( 4 ) or PMe₃ and PPh₃ ( 5 )). These products result from the protonation of the 11‐vertex closo‐cages along the Rh(1)? B(3) edge. These unusual cationic rhodathiaboranes are stable in solution and in the solid state and they have been fully characterized by multinuclear NMR spectroscopy. In addition, compound 5 was characterized by single‐crystal X‐ray diffraction. One remarkable feature in these structures is the presence of three {Rh(PPh₃)(PMe₃)}‐to‐{ηⁿ‐SB₉H₈(Py)} (n=4 or 5) conformers in the unit cell, thus giving an uncommon case of conformational isomerism. [1,1‐(PPh₃)₂‐3‐(Py)‐closo‐1,2‐RhSB₉H₈] ( 1 ), that is, the bis‐PPh₃‐ligated analogue of compounds 2 and 3 , is also protonated by TfOH, but, in marked contrast, the resulting cation, [1,3‐μ‐(H)‐1,1‐(PPh₃)₂‐3‐(Py)‐1,2‐RhSB₉H₈]⁺ ( 6 ), is attacked by a triflate anion with the release of a PPh₃ ligand and the formation of [8,8‐(OTf)(PPh₃)‐9‐(Py)‐nido‐8,7‐RhSB₉H₉] ( 9 ). The result is an equilibrium that involves cationic species 6 , neutral OTf‐ligated compound 9 , and [HPPh₃]⁺, which is formed upon protonation of the released PPh₃ ligand. The resulting ionic system reacts readily with H₂ to give cationic species [8,8,8‐(H)(PPh₃)₂‐9‐(Py)‐nido‐8,7‐RhSB₉H₉]⁺ ( 7 ). This reactivity is markedly higher than that previously found for compound 1 and it introduces a new example of proton‐assisted H₂ activation that occurs on a polyhedral boron‐containing compound.