Formation of N2O from a nickel nitrosyl: isolation of the cis-[N2O2]2- intermediate

Addition of 2,2'-bipyridine (bipy) to [Ni(NO)(bipy)][PF(6)] (1) results in formation of a rare five-coordinate nickel nitrosyl [Ni(NO)(bipy)(2)][PF(6)] (2). This complex exhibits a bent NO(-) ligand in the solid state. On standing in acetonitrile, 2 furnishes the NO coupled product, [Ni(κ(2)-O(2)N(2))(bipy)] (8) in moderate yield. Subsequent addition of 2 equiv of acetylacetone (H(acac)) to 8 results in formation of [Ni(acac)(2)(bipy)], N(2)O, and H(2)O. Preliminary mechanistic studies suggest that the N-N bond is formed via a bimetallic coupling reaction of two NO(-) ligands.     

Design, synthesis and biological evaluation of non-natural modulators of quorum sensing in Pseudomonas aeruginosa

Many species of bacteria employ a mechanism of intercellular communication known as quorum sensing which is mediated by small diffusible signalling molecules termed autoinducers. The most common class of autoinducer used by Gram-negative bacteria are N-acylated-L-homoserine lactones (AHLs). Pseudomonas aeruginosa is a clinically important bacterium which is known to use AHL-mediated quorum sensing systems to regulate a variety of processes associated with virulence. Thus the selective disruption of AHL-based quorum sensing represents a strategy to attenuate the pathogenicity of this bacterium. Herein we describe the design, synthesis and biological evaluation of a collection of structurally novel AHL mimics. A number of new compounds capable of modulating the LasR-dependent quorum sensing system of P. aeruginosa were identified, which could have value as molecular tools to study and manipulate this signalling pathway. Worthy of particular note, this research has delivered novel potent quorum sensing antagonists, which strongly inhibit the production of virulence factors in a wild type strain of this pathogenic bacterium.     

Orbitals and the Interpretation of Photoelectron Spectroscopy and (e,2e) Ionization Experiments

Electron momentum spectroscopy, scanning tunneling microscopy, and photoelectron spectroscopy provide unique information about electronic structure, but their interpretation has been controversial. This essay discusses a framework for interpretation. Although this interpretation is not new, we believe it is important to present this framework in light of recent publications. The key point is that these experiments provide information about how the electron distribution changes upon ionization, not how electrons behave in the pre‐ionized state. Therefore, these experiments do not lead to a “selection of the correct orbitals” in chemistry and do not overturn the well‐known conclusion that both delocalized molecular orbitals and localized molecular orbitals are useful for interpreting chemical structure and dynamics. The two types of orbitals can produce identical total molecular electron densities and therefore molecular properties. Different types of orbitals are useful for different purposes.     

A small molecule discrimination map of the antibiotic resistance kinome

Kinase-mediated resistance to antibiotics is a significant clinical challenge. These enzymes share a common protein fold characteristic of Ser/Thr/Tyr protein kinases. We screened 14 antibiotic resistance kinases against 80 chemically diverse protein kinase inhibitors to map resistance kinase chemical space. The screens identified molecules with both broad and narrow inhibition profiles, proving that protein kinase inhibitors offer privileged chemical matter with the potential to block antibiotic resistance. One example is the flavonol quercetin, which inhibited a number of resistance kinases in vitro and in vivo. This activity was rationalized by determination of the crystal structure of the aminoglycoside kinase APH(2″)-IVa in complex with quercetin and its antibiotic substrate kanamycin. Our data demonstrate that protein kinase inhibitors offer chemical scaffolds that can block antibiotic resistance, providing leads for co-drug design.     

Quantum mechanical generalized phase-shift approach to atom-surface scattering: a Feshbach projection approach to dealing with closed channel effects

We have developed a new method for solving quantum dynamical scattering problems, using the time-independent Schr?dinger equation (TISE), based on a novel method to generalize a "one-way" quantum mechanical wave equation, impose correct boundary conditions, and eliminate exponentially growing closed channel solutions. The approach is readily parallelized to achieve approximate N(2) scaling, where N is the number of coupled equations. The full two-way nature of the TISE is included while propagating the wave function in the scattering variable and the full S-matrix is obtained. The new algorithm is based on a "Modified Cayley" operator splitting approach, generalizing earlier work where the method was applied to the time-dependent Schr?dinger equation. All scattering variable propagation approaches to solving the TISE involve solving a Helmholtz-type equation, and for more than one degree of freedom, these are notoriously ill-behaved, due to the unavoidable presence of exponentially growing contributions to the numerical solution. Traditionally, the method used to eliminate exponential growth has posed a major obstacle to the full parallelization of such propagation algorithms. We stabilize by using the Feshbach projection operator technique to remove all the nonphysical exponentially growing closed channels, while retaining all of the propagating open channel components, as well as exponentially decaying closed channel components.     

Multiply charged ions in the mass spectra of aromatics

The prominence of multiply charged molecular and fragment ions upon electron-impact in the mass spectrometer is proposed as an experimental, empirical indication of aromatic character. The effects of electron withdrawing and donating substituents on the production of multiply charged ions are considered and appearance potentials are noted for several species.     

Dissociation quotients of succinic acid in aqueous sodium chloride media to 225°C

The first and second molal dissociation quotients of succinic acid were measured potentiometrically with a hydrogen-electrode, concentration cell. These measurements were carried out from 0 to 225°C over 25° intervals at five ionic strengths ranging from 0.1 to 5.0 molal (NaCl). The dissociation quotients from this and two other studies were combined and treated with empirical equations to yield the following thermodynamic quantities for the first acid dissociation equilibrium at 25°C: log K_1a=–4.210±0.003; H _1a ⁰ =2.9±0.2 kJ-mol^–1; S _1a ⁰ =–71±1 J-mol^–1-K^–1; and C _p1a ⁰ =–98±3 J-mol^–1-K^–1; and for the second acid dissociation equilibrium at 25°C: log K_2a=–5.638±0.001; H _2a ⁰ = –0.5±0.1 kJ-mol^–1; S _2a ⁰ =–109.7±0.4 J-mol^–1-K^–1; and C _p2a ⁰ = –215±8 J-mol^–1-K^–1.     

PM3-SM3: A general parameterization for including aqueous solvation effects in the PM3 molecular orbital model

Our recently proposed scheme for including aqueous solvation free energies in parameterized NDDO SCF models is extended to the Parameterized Model 3 semiempirical Hamiltonian. The solvation model takes accurate account of the hydrophobic effect for hydrocarbons, as well as electric polarization of the solvent, the free energy of cavitation, and dispersion interactions. Eight heteroatoms are included (along with H and C), and the new model is parameterized accurately for the water molecule itself, which allows meaningful treatments of specifically hydrogen bonded water molecules. The unphysical partial charges on nitrogen atoms predicted by the Parameterized Model 3 Hamiltonian limit the accuracy of the predicted solvation energies for some compounds containing nitrogen, but the model may be very useful for other systems, especially those for which PM3 is preferred over AM1 for the solute properties of the particular system under study. © 1992 by John Wiley & Sons, Inc.     

Ternary mutual diffusion coefficients of ZnCl2−KCl−H2O at 25°C by Rayleigh interferometry

Mutual diffusion coefficients and densities were measured for aqueous ZnCl₂–KCl mixtures at 25° by using free-diffusion Rayleigh interferometry and pycnometry, respectively. The ZnCl₂ concentrations were fixed at 1.5 mol-dm^–3, whereas those of KCl were 0.5, 1.25, 2.0, or 4.0 mol-dm^–3. This corresponds to a half charged zinc-chlorine storage battery at various suporting electrolyte concentrations. The main-term coefficient of ZnCl₂ only varies by 10% with KCl concentration, whereas that of KCl varies by about 22%. The ZnCl₂ cross-term coefficient remains small and positive; in contrast the KCl cross-term coefficient goes through a maximum and is negative at high and low KCl concentrations. At KCl concentrations of 0.5 and 4.0 mol-dm^–3, solutions with the KCl c0 are statically and dynamically (diffusively) unstable at the top and bottom of the boundary. Evaluation of the parameters of the non-linear least-squares solution to the diffusion equation is difficult for the 1.25 mol-dm^–3 KCl case, since this system has nearly equal eigenvalues in its diffusion coefficient matrix.