A Generalized Markov Sampler

A recent development of the Markov chain Monte Carlo (MCMC) technique is the emergence of MCMC samplers that allow transitions between different models. Such samplers make possible a range of computational tasks involving models, including model selection, model evaluation, model averaging and hypothesis testing. An example of this type of sampler is the reversible jump MCMC sampler, which is a generalization of the Metropolis–Hastings algorithm. Here, we present a new MCMC sampler of this type. The new sampler is a generalization of the Gibbs sampler, but somewhat surprisingly, it also turns out to encompass as particular cases all of the well-known MCMC samplers, including those of Metropolis, Barker, and Hastings. Moreover, the new sampler generalizes the reversible jump MCMC. It therefore appears to be a very general framework for MCMC sampling. This paper describes the new sampler and illustrates its use in three applications in Computational Biology, specifically determination of consensus sequences, phylogenetic inference and delineation of isochores via multiple change-point analysis.     

Homology equivalences inducing an epimorphism on the fundamental group and Quillen's plus construction

Quillen's plus construction is a topological construction that kills the maximal perfect subgroup of the fundamental group of a space without changing the integral homology of the space. In this paper we show that there is a topological construction that, while leaving the integral homology of a space unaltered, kills even the intersection of the transfinite lower central series of its fundamental group. Moreover, we show that this is the maximal subgroup that can be factored out of the fundamental group without changing the integral homology of a space.

     

Hopf Algebras, Renormalization and Noncommutative Geometry

We explore the relation between the Hopf algebra associated to the renormalization of QFT and the Hopf algebra associated to the NCG computations of tranverse index theory for foliations. Received: 14 August 1998/ Accepted: 5 October 1998     

Single-server queues with spatially distributed arrivals

Consider a queueing system where customers arrive at a circle according to a homogeneous Poisson process. After choosing their positions on the circle, according to a uniform distribution, they wait for a single server who travels on the circle. The server's movement is modelled by a Brownian motion with drift. Whenever the server encounters a customer, he stops and serves this customer. The service times are independent, but arbitrarily distributed. The model generalizes the continuous cyclic polling system (the diffusion coefficient of the Brownian motion is zero in this case) and can be interpreted as a continuous version of a Markov polling system. Using Tweedie's lemma for positive recurrence of Markov chains with general state space, we show that the system is stable if and only if the traffic intensity is less than one. Moreover, we derive a stochastic decomposition result which leads to equilibrium equations for the stationary configuration of customers on the circle. Steady-state performance characteristics are determined, in particular the expected number of customers in the system as seen by a travelling server and at an arbitrary point in time.     

On the Role of Physics in the Growth and Pattern Formation of Multi-Cellular Systems: What can we Learn from Individual-Cell Based Models?

We demonstrate that many collective phenomena in multi-cellular systems can be explained by models in which cells, despite their complexity, are represented as simple particles which are parameterized mainly by their physical properties. We mainly focus on two examples that nevertheless span a wide range of biological sub-disciplines: Unstructured cell populations growing in cell culture and growing cell layers in early animal development. While cultured unstructured cell populations would apriori been classified as particularly suited for a biophysical approach since the degree to which they are committed to a genetic program is expected to be modest, early animal development would be expected to mark the other extreme—here the degree of determinism according to a genetic program would be expected to be very high. We consider a number of phenomena such as the growth kinetics and spatial structure formation of monolayers and multicellular spheroids, the effect of the presence of another cell type surrounding the growing cell population, the effect of mutations and the critical surface dynamics of monolayers. Different from unstructured cell populations, cells in early development and at tissue interfaces usually form highly organized structures. An example are tissue layers. Under certain circumstances such layers are observed to fold. We show that folding pattern again can largely be explained by physical mechanisms either by a buckling instability or active cell shape changes. The paper combines new and published material and aims at an overview of a wide range of physical aspects in unstructured populations and growing tissue layers.     

New disc-shaped mesogens based on pentakis(phenylethynyl)benzene derivatives

First examples of amphiphilic alkyl pentakis(phenylethynyl)benzene ethers containing functional groups at the terminal position of their alkoxy chains were synthesized by etherification of pentabromophenol with 11-bromoundecan-1-ol and 11-bromoundecanoic acid ethyl ester, respectively, and subsequent palladium catalyzed, fivefold coupling reactions with the substituted phenylacetylene. Two undecanoic acid derivatives with different pentakis(phenylethynyl)phenoxy substituents in the ω-position were prepared by ester cleavage from the corresponding ethyl esters. The thermal behaviours of five penta-alkynes in their pure states, as well as of their charge transfer complexes formed from mixtures with 2,4,7-tri-nitrofluorenone, were examined.     

Low-energy fission investigated in reactions of 750 AMeV 238U-ions on 208Pb. II: Isotopic distributions

Projectile fission of 750 AMeV ²³⁸U-ions interacting with a Pb target was studied by means of the spectrometer FRS, GSI-Darmstadt. One of the two fission fragments was detected with a transmission of few percent and identified in mass and charge. Low-energy fission (E^* < 25 MeV) events were selected by their magnetic rigidity. Whereas the production of asymmetric fission events is dominated by the GDR excitation, very asymmetric fission and symmetric fission take place after a GQR or DGDR excitation or after a nuclear interaction. Cross sections of more than 250 isotopes were measured. Isotopic distributions of low-energy fission were reconstructed for elements from Se to Te. The fission modes SI, SII and SL were clearly shown in these distributions and in the mass and TKE distributions. Charge polarization and mass dispersion were deduced for each fission mode. Finally, the characteristics of the low-energy fission process explain the production rates of neutron-rich species. Received: 14 July 1997 / Revised version: 6 October 1997