The de novo methylation activity of Dnmt3a is distinctly different than that of Dnmt1

Background  

Though Dnmt1 is considered the primary maintenance methyltransferase and Dnmt3a and Dnmt3b are considered de novo methyltransferases in mammals, these three enzymes may work together in maintaining as well as establishing DNA methylation patterns. It has been proposed that Dnmt1 may carry out de novo methylation at sites in the genome with transient single-stranded regions, such as replication origins, and then spread methylation from these nucleation sites in vivo, even though such activity has not been reported.     

OXYGEN DIFFUSION THROUGH HORSERADISH PEROXIDASE

The quenching by molecular oxygen of the fluorescence from a protoporphyrin IX adduct of horseradish peroxidase has been investigated using both intensity and time-resolved techniques. The bimolecular quenching rate constant determined for this process, as evaluated by the conventional Stern-Volmer analysis, was 2 x 10(8) M-1 s-1, among the lowest observed for protein systems. This result suggests that the heme binding site in horseradish peroxidase is relatively inaccessible to oxygen, which may account for the observation of room temperature phosphorescence in aerated solutions from enzymatically created triplet states.     

Iridoids : on the synthesis and structure of specionin

Recently, structure $\text{8b}$ has been assigned to the iridoid specionin. In the present letter the total synthesis of $\text{8b}$ is described. Comparison of spectral data reveals that the final product is not identical with natural specionin. Therefore the original structural assignment of specionin must be revised.     

Vanadium(V) environments in bismuth vanadates: A structural investigation using Raman spectroscopy and solid state V NMR

The Bi₂O₃---V₂O₅ system was examined using Raman spectroscopy and solid state ⁵¹V wideline, magic-angle spinning (MAS), and nutation NMR spectroscopy. The methods are shown to be complementary in the identification of the various phases and in the characterization of their vanadium site symmetries. Most of the compositions examined (1:1 ≤ Bi:V ≤ 60:1) are multiphasic. Depending on the Bi:V ratio, the following phases have been identified: BiVO₄, Bi₄V₂O₁₁, a triclinic type-II phase, a cubic type-I phase, γ-Bi₂O₃ doped with V(V) (sillenite), and β-Bi₂O₃. Detailed spectroscopic characterization reveals that vanadium is tetrahedrally coordinated in all these compounds, and that the degree of symmetry increases with increasing Bi:V ratio. At the highest Bi:V ratios, the combined interpretation of the Raman and NMR data provides strong evidence for the presence of Bi⁵⁺O₄ tetrahedra.     

Green and red fluorescent proteins: photo- and thermally induced dynamics probed by site-selective spectroscopy and hole burning.

The cloning and expression of autofluorescent proteins in living matter, combined with modern imaging techniques, have thoroughly changed the world of bioscience. In particular, such proteins are widely used as genetically encoded labels to track the movement of proteins as reporters of cellular signals and to study protein-protein interactions by fluorescence resonance energy transfer (FRET). Their optical properties, however, are complex and it is important to understand these for the correct interpretation of imaging data and for the design of new fluorescent mutants. In this Minireview we start with a short survey of the field and then focus on the photo- and thermally induced dynamics of green and red fluorescent proteins. In particular, we show how fluorescence line narrowing and high-resolution spectral hole burning at low temperatures can be used to unravel the photophysics and photochemistry and shed light on the intricate electronic structure of these proteins.     

Synthesis of quaternary amino acids bearing a (2'Z)-fluorovinyl alpha-branch: potential PLP enzyme inactivators

Protected alpha-formyl amino acids, themselves available from the corresponding alpha-vinyl amino acids, are stereoselectively transformed into the (Z)-configured alpha-(2'-fluoro)vinyl amino acids via a three-step sequence. The route employs McCarthy's reagent, diethyl alpha-fluoro-alpha-(phenylsulfonyl)methyl phosphonate, and proceeds via the intermediate (E)-alpha-fluorovinyl sulfones and (E)-alpha-fluorovinylstannanes. The latter may either be exploited as novel cross-coupling partners for fluorovinyl branch extension or be globally deprotected, to provide the title compounds. [structure: see text]     

Deprotonation-electrophile trapping of terminal epoxides

Organolithium-induced deprotonation of terminal epoxides in the presence of appropriate diamine ligands allows trapping with a range of electrophiles, yielding functionalised di- and tri-substituted epoxides in good yields and with control of stereochemistry at the epoxide.     

High-Yield Syntheses of Tetra-O-benzyl-α-D-glucopyranosyl bromide and Tetra-O-pivaloyl-α-D-glucopyranosyl bromide and their Advantage in the Koenigs-Knorr Reaction

Several improved approaches for the preparation of tetra-O-benzyl-α-D-glucopyranosyl bromide and tetra-O-pivaloyl-α-D-glucopyranosyl bromide are discussed. The importance of these compounds, which are useful glycosyl donors, was demonstrated by successful preparation of cholesteryl glucopyranosides in an almost neutral medium without the formation of orthoesters. In addition, accurate ¹H and ¹³C NMR resonance assignments of the synthesized cholesteryl glycosides were performed by 2D NMR spectroscopy.