Synthesis and characterization of bis[bis(pentafluoroethyl)phosphinyl]imides, M(+)N[(C2F5)2P(O)]2(-), M = H, Na, K, Cs, Ag, Me4N

A convenient synthesis and a full characterization of the strong acid bis[bis(pentafluoroethyl)phosphinyl]imide and some of its salts M (+)N[(C 2F 5) 2P(O)] 2 (-), M = Na, K, Cs, Ag, Me 4N, are presented. Their thermal (mp, T dec.) and spectroscopic (IR, Raman, NMR) properties are discussed. A single crystal structure of [Me 4N][N{P(O)(C 2F 5) 2} 2] has been obtained, and the structural parameters of the anion are compared with the results of quantum-chemical calculations. The observed properties are comparable to those of bis((trifluoromethyl)sulfonyl)imide and their derivatives.     

Synthesis, structure, and electronic properties of a dimer of Ru(bpy)2 doubly bridged by methoxide and pyrazolate

The heterobridged dinuclear complex cis,cis-[(bpy) 2Ru(mu-OCH 3)(mu-pyz)Ru(bpy) 2] (2+) ( 1; bpy = 2,2'-bipyridine; pyz = pyrazolate) was synthesized and isolated as a hexafluorophosphate salt. Its molecular structure was fully characterized by X-ray crystallography, (1)H NMR spectroscopy, and ESI mass spectrometry. The compound 1.(PF 6) 2 (C 44H 38F 12N 10OP 2Ru 2) crystallizes in the monoclinic space group P2 1/ c with a = 13.3312(4) A, b = 22.5379(6) A, c = 17.2818(4) A, beta = 99.497(2) degrees , V = 5121.3(2) A (3), and Z = 4. The meso diastereoisomeric form was exclusively found in the crystal structure, although the NMR spectra clearly demonstrated the presence of two stereoisomers in solution (rac and meso forms at approximately 1:1 ratio). The electronic properties of the complex in acetonitrile were investigated by cyclic voltammetry and UV-vis and NIR-IR spectroelectrochemistries. The stepwise oxidation of the Ru (II)-Ru (II) complex into the mixed-valent Ru (II)-Ru (III) and fully oxidized Ru (III)-Ru (III) states is fully reversible on the time scale of the in situ (spectro)electrochemical measurements. The mixed-valent species displays strong electronic coupling, as evidenced by the large splitting between the redox potentials for the Ru(III)/Ru(II) couples (Delta E 1/2 = 0.62 V; K c = 3 x 10 (10)) and the appearance of an intervalence transfer (IT) band at 1490 nm that is intense, narrow, and independent of solvent. Whereas this salient band in the NIR region originates primarily from highest-energy of the three IT transitions predicted for Ru(II)-Ru(III) systems, a weaker absorption band corresponding to the lowest-energy IT transition was clearly evidenced in the IR region ( approximately 3200 cm (-1)). The observation of totally coalesced vibrational peaks in the 1400-1650 cm (-1) range for a set of five bpy spectator vibrations in Ru (II)-Ru (III) relative to Ru (II)-Ru (II) and Ru (III)-Ru (III) provided evidence for rapid electron transfer and valence averaging on the picosecond time scale. Other than a relatively short Ru...Ru distance (3.72 A for the crystalline Ru (II)-Ru (II) complex), the extensive communication between metal centers is attributed mostly to the pi-donor ability of the bridging ligands (pyz, OMe) combined with the pi-acceptor ability of the peripheral (bpy) ligands.     

Implementations of Nosé-Hoover and Nosé-Poincaré thermostats in mesoscopic dynamic simulations with the united-residue model of a polypeptide chain

Molecular dynamics (MD) simulations generate a canonical ensemble only when integration of the equations of motion is coupled to a thermostat. Three extended phase space thermostats, one version of Nose-Hoover and two versions of Nose-Poincare, are compared with each other and with the Berendsen thermostat and Langevin stochastic dynamics. Implementation of extended phase space thermostats was first tested on a model Lennard-Jones fluid system; subsequently, they were implemented with our physics-based protein united-residue (UNRES) force field MD. The thermostats were also implemented and tested for the multiple-time-step reversible reference system propagator (RESPA). The velocity and temperature distributions were analyzed to confirm that the proper canonical distribution is generated by each simulation. The value of the artificial mass constant, Q, of the thermostat has a large influence on the distribution of the temperatures sampled during UNRES simulations (the velocity distributions were affected only slightly). The numerical stabilities of all three algorithms were compared with each other and with that of microcanonical MD. Both Nose-Poincare thermostats, which are symplectic, were not very stable for both the Lennard-Jones fluid and UNRES MD simulations started from nonequilibrated structures which implies major changes of the potential energy throughout a trajectory. Even though the Nose-Hoover thermostat does not have a canonical symplectic structure, it is the most stable algorithm for UNRES MD simulations. For UNRES with RESPA, the "extended system inside-reference system propagator algorithm" of the RESPA implementation of the Nose-Hoover thermostat was the only stable algorithm, and enabled us to increase the integration time step.     

On the Construction of Composite Wannier Functions

We give a constructive proof for the existence of a Bloch basis of rank \({N}\) which is both smooth (real analytic) and periodic with respect to its \({d}\)-dimensional quasi-momenta, when \({1\leq d\leq 2}\) and \({N\geq 1}\). The constructed Bloch basis is conjugation symmetric when the underlying projection has this symmetry, hence the corresponding exponentially localized composite Wannier functions are real. In the second part of the paper, we show that by adding a weak, globally bounded but not necessarily constant magnetic field, the existence of a localized basis is preserved.     

In situ hydrazine reduced silver colloid synthesis – Enhancing SERS reproducibility

Herein we report a novel strategy for the in situ synthesis of the silver colloids for LoC-SERS applications. Silver nanoparticles are obtained in a segmented flow based glass microfluidic chip by the reduction of silver ions with hydrazine in ammonium hydroxide solution. Citrate ions are used as protecting agents. The synthesized nanoparticles are characterized by UV-VIS spectroscopy, SEM and TEM imaging. The SERS performance of the in situ synthesized nanoparticles is tested by using adenine as a test analyte right after the colloid synthesis. Reproducibility is tested by repeating the measurements three times at independent days applying the same measurement conditions. In comparison with nanoparticles synthesized in a conventional strategy i.e. in a large batch, chip synthesized nanoparticles show a better day-to-day and long-term reproducibility, lower detection limits and broader working ranges. The great advantage offered by the in situ synthesized colloids combined with the already proven potential of LoC-SERS for bioanalytics, raises the possibility of the employment of LoC-SERS as a fast and sensitive analytic tool in a plethora of applications.     

Fast‐Track,One‐Step E. coli Detection: A Miniaturized Hydrogel Array Permits Specific Direct PCR and DNA Hybridization while Amplification

A timesaving and convenient method for bacterial detection based on one‐step, one‐tube deoxyribonucleic acid (DNA) hybridization on hydrogel array while target gene amplification is described. The hydrogel array is generated by a fast one‐pot synthesis, where N,N′‐dimethylacrylamide/polyethyleneglycol(PEG₁₉₀₀)‐bisacrylamide mixture polymerizes via radical photoinitiation by visible light within 20 min concomitant with in situ capture probe immobilization. These DNA‐functionalized hydrogel droplets arrayed on a planar glass surface are placed in the polymerase chain reaction (PCR) mixture during the thermal amplification cycles. The bacterial cells can be implemented in a direct PCR reaction, omitting the need for prior template DNA extraction. The resulting fluorescence signal is immediately detectable after the end of the PCR (1 h) following one short washing step by microscopy. Therefore a valid signal can be reached within 1.5 h including 10 min for pipetting and placement of the tubes and chips. The performance of this novel hydrogel DNA array was successfully proven with varying cell numbers down to a limit of 10¹Escherichia coli cells.

     

Electronic coupling in the excited electronic state of stacked DNA base homodimers

The nature of the electronic coupling of stacked nucleic acid bases adenine (A), thymine (T), and cytosine (C), in A-A, T-T, and C-C complexes in their excited states was investigated; a different character of the electronic coupling for the T-T complex was shown.     

Templating mesoporous silica with chiral block copolymers and its application for enantioselective separation

In this paper we describe the synthesis of chiral mesoporous silica based on chiral block copolymers of poly(ethylene oxide) and of d-phenylalanine (PEO-b-D-Phe) as a surfactant template. The resulting porous structures are characterized by nitrogen sorption experiments, transmission electron microscopy, and small-angle XRD. It is shown that chiral block copolymers of PEO-b-D-Phe are effective as a surfactant template for the preparation of silica materials with highly ordered periodic mesoporous structures of hexagonal symmetry with a pore size of ca. 5 nm and high surface areas of ca. 700 m2/g. The enantioselectivity feature of this porous silica, after the extraction of the chiral copolymers, was examined by selective adsorption of enantiomers and racemic solutions of valine. The selective adsorption was measured by circular dichroism (CD) spectroscopy. A chiral selectivity factor of 2.34 was found with the D enantiomer of valine adsorbed preferably.