Triplex and quadruplex DNA structures studied by electrospray mass spectrometry

DNA triplex and quadruplex structures have been successfully detected by electrospray ionization mass spectrometry (ESI-MS). Circular dichroism and UV-melting experiments show that these structures are stable in 150 mM ammonium acetate at pH 7 for the quadruplexes and pH 5.5 for the triplexes. The studied quadruplexes were the tetramer [d(TGGGGT)](4), the dimer [d(GGGGTTTTGGGG)](2), and the intramolecular folded strand dGGG(TTAGGG)(3), which is an analog of the human telomeric sequence. The absence of sodium contamination allowed demonstration of the specific inclusion of n - 1 ammonium cations in the quadruplex structures, where n is the number of consecutive G-tetrads. We also detected the complexes between the quadruplexes and the quadruplex-specific drug mesoporphyrin IX. MS/MS spectra of [d(TGGGGT)](4) and the complex with the drug are also reported. As the drug does not displace the ammonium cations, one can conclude that the drug binds at the exterior of the tetrads, and not between them. For the triplex structure the ESI-MS spectra show the detection of the specific triplex, at m/z values typically higher than those typically observed for duplex species. Upon MS/MS the antigene strand, which is bound into the major groove of the duplex, separates from the triplex. This is the same dissociation pathway as in solution. To our knowledge this is the first report of a triplex DNA structure by electrospray mass spectrometry.     

Structure électronique du fluoroacétylène et du chloroacétylène

Résumé La structure et le spectre électronique du fluoroacétylène et du chloroacétylène ont été étudiés à l'aide d'une méthode matricielle du type LCAO SCF MO où les fonctions monoélectroniques sont des orbitales orthogonalisées de Löwdin. Le transfert de charge de l'halogène au système est d'environ 0,04 électron 2p pour le fluor et 0,08 électron 3p pour le chlore. L'étude des transitions électroniques indique pour la transition du type - située vers 1850 Å un effet bathochrome et une augmentation de la force oscillatrice lorsque l'électronégativité de l'halogène décroît. Ceci permet d'identifier la transition située vers de plus grandes longueurs d'onde avec une transition - dont la force oscillatrice varie en sens inverse de celle de la transition -.

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The electronic structure and spectra of fluoroacetylene and chloroacétylène have been studied by a matricial method of LCAO SCF MO type where the monoelectronic functions are Löwdin'S orthogonalized orbitals. The charge transfer from the halogen to the system is equal to about 0,04 2p electron for fluorine and to 0,08 3p electron for chlorine. A bathochromic effect and an increase of the oscillator strength with the halogen electronegativity decreasing have been found for the - transition at 1850 Å; from the theoretical results it is possible to identify the transition of lower energy as a - transition whose oscillator strength varies the other way than that of the - transition.

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Zusammenfassung Struktur und Elektronenspektren von Fluor- und Chloracetylen wurden mit Hilfe einer Matrizenmethode vom LCAO-SCF-MO-Typ untersucht, wobei die Einelektronenfunktionen nach Löwdin orthogonalisiert wurden. Der Ladungsübergang vom Halogen zum -System entspricht etwa 0,04 2p-Elektronen bei Fluor und 0,08 3p-Elektronen bei Chlor. Für den --Übergang um 1850 Å wird für abnehmende Elektronegativität des Halogens eine bathochrome Verschiebung und eine Zunahme der Oscillatorenstärke gefunden. Das erlaubt, die längerwellige Bande einem - -Übergang zuzuordnen, dessen Oscillatorenstärke sich in entgegengesetzter Richtung ändert.

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Nous tenons à remercier Monsieur Berthier pour de nombreuses discussions sur ce travail, Messieurs Romanet et Wojtkowiak pour avoir attiré notre attention sur les problèmes posés par les spectres ultraviolets des halogéno-acétyléniques et Monsieur H. v. Hirschhausen pour nous avoir signalé une erreur numérique dans la fin de cet article.     

(18‐Crown‐6)‐μ‐oxo‐hexa­kis(tetra­hydro­borato)diuranium(IV): an unprecedented asymmetric dinuclear complex

In the title compound, (1,4,7,10,13,16‐hexa­oxacyclo­octa­decane‐1κ⁶O)‐μ‐oxo‐1:2κ²O:O‐hexa­kis(tetra­hydro­borato)‐1κ³H;2κ²H;2κ²H;2κ³H;2κ³H;2κ³H‐diuranium(IV), [U₂(BH₄)₆O(C₁₂H₂₄O₆)], one of the U atoms (U1), located at the centre of the crown ether moiety, is bound to the six ether O atoms, and also to a tridentate tetra­hydro­borate group and a μ‐oxo atom in axial positions. The other U atom (U2) is bound to the same oxo group and to five tetra­hydro­borate moieties, three of them tridentate and the other two bidentate. The two metal centres are bridged by the μ‐oxo atom in an asymmetric fashion, thus giving the species (18‐crown‐6)(κ³‐BH₄)U=(μ‐O)—U(κ³‐BH₄)₃(κ²‐BH₄)₂, in which the U1=O and U2—O bond lengths to the μ‐O atom [1.979 (5) and 2.187 (5) Å, respectively] are indicative of the presence of positive and negative partial charges on U1 and U2, respectively.     

Performance of an ultra-low elution-volume 96-well plate: drug discovery and development applications

Recently, sample preparation has been considered to be the major cause of bottlenecks during high-throughput analysis. With the assistance of robotic liquid handlers and the 96-well plate format, more samples can be prepared for subsequent liquid chromatography/tandem mass spectrometry (LC/MS/MS) analysis. Protein precipitation is still widely used despite potential loss of sensitivity or variable results due to ion suppression. The use of solid-phase extraction (SPE) clearly gives superior results but may not be as cost effective as protein precipitation due to the labor and material costs associated with the process. Here, a novel 96-well SPE plate is described that was designed to minimize the elution volume required for quantitative elution of analytes. The plate is packed with 2 mg of a high-capacity SPE sorbent that allows loading of up to 750 microL of plasma, while the novel design permits elution with as little as 25 microL. Therefore, the plate offers up to a 15-fold increase in sample concentration. The evaporation and reconstitution step that is typically required in SPE is avoided due to the concentrating ability of the plate. Examples of applications in drug discovery/development are shown and results are compared to protein precipitation. Excellent sensitivity and linearity are demonstrated.     

Access to 2-fluoroacrylates and their 3-chloro derivatives by chemical hydrogenolysis of 3,3-dichloro-2-fluoroacrylates

The formation of 3-chloro-2-fluoroacrylates 2 and 2-fluoroacrylates 3 by hydrogenolysis of 3,3-dichloro-2-fluoroacrylates 1 was studied by using Bu₃SnH, zinc, the sodium sulphite/sodium formate mixture or iron pentacarbonyl in the presence of a hydrogen donor (Et₃SiH or CH₃OH). The two last couples can be used to prepare the 3-chloro derivatives 2, whereas for the preparation of the 3,3-dihydro derivatives 3, zinc is the most appropriate reducing agent. Keywords: 2-Fluoroacrylate; 3-Chloro-2-fluoroacrylate; 3,3-Dichloro-2-fluoroacrylate; Tributyltin hydride; Zinc; Sodium sulphite; Sodium formate; Iron pentacarbonyl; NMR spectroscopy; IR spectroscopy     

cis-trans Isomerization of bis(Dialkylsulfide)Dihaloplatinum(II) Complexes in Solution

The equilibrium energetics and the kinetics of cis-trans isomerization of some bis(dialkylsulfide)dihaloplatinum(II) complexes have been examined by ¹H-NMR. spectroscopy. The isomers are stable in chloroform but each form isomerizes to an equilibrium mixture when free dialkylsulfide is added. The cis to trans process is endothermic and the position of the equilibrium is markedly dependent on the nature of the donor atoms and of the solvent. The rate of isomerization of Pt(Me₂S)₂Cl₂ is first order in complex and in Me₂S. The isomerization proceeds by a double displacement mechanism as it is shown that the tris(dimethylsulfide)chloroplatinum(II) cation is an isolable intermediate of the reaction. When free Me₂S is added to trans-Pd(Me₂S)₂Cl₂, isomerization does not occur and one observes instead a fast ligand exchange. Its mechanism is the usual associative one for substitutions in square planar d⁸complexes.     

QUENCHING OF TYROSINE FLUORESCENCE BY PHOSPHATE IONS: A MODEL STUDY FOR PROTEIN-NUCLEIC ACID COMPLEXES

Abstract— In order to test the ability of phosphate groups to quench the tyrosine fluorescence in nucleic acid-protein complexes, we have studied the effect of several phosphate ions on the fluorescence of tyrosine derivatives. Mono and bianions (H₂PO₄ and HPO₄^2–) which are good proton acceptors quenched the fluorescence of all the phenolic compounds studied except that of O -methyl tyrosine. With the other derivatives (tyrosine, N -acetyl tyrosinamide and lysyl-tyrosyl-α lysine) fluorescence inhibition was accompanied by the appearance of a long wavelength emission (345 nm) attributed to tyrosinate anions. The quenching of tyrosine emission was due to the deprotonation of the phenolic group promoted in the excited state by phosphate ions and leading to the weakly fluorescent tyrosinate ion. Mono and dianions of phosphate mono ester inhibited tyrosine fluorescence as did unesterified phosphates. However, phosphate diester did not have any effect on the fluorescence of tyrosine derivatives. We conclude from this study that in nucleic acid-protein complexes phosphate groups are not able to quench tyrosine fluorescence except at the end of polynucleotide chains. Since monoester and diester monoanions have a different behavior, we propose that quenching of tyrosine fluorescence by monoanions requires the formation of two hydrogen bonds. This complex cannot form with diesters which consequently do not quench tyrosine fluorescence.     

Preparation de β-cetonitriles via l'acylation du cyanacetate de trimethylsilyle par les anhydrides mixtes.

β-ketonitriles R¹COCH₂CN and R¹COCH(R²)CN are respectively prepared from (CH₃)₃SiOCOCHLiCN or R²CHLiCN by acylation reaction with mixed anhydrides RCOOCO₂Et.     

Ion spray-tandem mass spectrometry of supramolecular coordination complexes

Double-helical [M₂L₂] ⁿ⁺, triple-helical [M₂L₃] ⁿ⁺, and toroidal [M₃L₃] ⁿ⁺ (M = Cu, Co, Fe, Ni, La, Eu, Gd, Tb, or Lu) supramolecular complexes have been fully characterized by ion spray mass spectrometry (IS-MS). The IS-MS spectra from pure acetonitrile solutions reflect the nature of the cations present in solution with conservation of the charge state and allow an efficient qualitative speciation of the compounds. The mass spectrometry results can be correlated with other powerful techniques (nuclear magnetic resonance and electronic spectroscopy) for the characterization of supramolecular complexes in solution, Structural information is obtained by collision-induced dissociation, which strongly depends on the metal ions used in the supramolecular complexes and on the various connectivities and topologies of the ligands. When the ligand contains 3,5dimethoxybenzyl groups bound to the benzimidazole rings, the partial fragmentation of the complexes is associated with a decrease of the total charge of the complexes and the appearance of the characteristic fragment at m/z 151 that corresponds to the 3,5-dimethoxybenzyl cation. A detailed analysis of the fragmentation pathways of these supramolecular complexes suggests that the metal-nitrogen coordination bonds are very strong in the gas phase.     

Micrometric BN powders used as catalyst support: influence of the precursor on the properties of the BN ceramic

Thin powders and foams of boron nitride have been prepared from molecular precursors for use as noble metal supports in the catalytic conversion of methane. Different precursors originating from borazines have been tested. The best results were obtained using a precursor derived from trichloroborazine (TCB) which, after reacting with ammonia at room temperature and then thermolyzing up to 1800°C, led to BN powders with a specific area of more than 300 m² g⁻¹ and a micrometric spherical texture. Comparable results were obtained using polyborazylene under similar conditions. Aminoborazine-derived precursors did not yield such high specific area ceramics but the BN microstructure resembled a foam with a crystallized skin and amorphous internal part. These differences were related to the chemical mechanism of the conversion of the precursor into BN. Polyhaloborazines and polyborazines yielded BN through gas-solid reactions whereas aminoborazine polymers could be kept waxy up to high temperatures, which favored the glassy foam. Catalysts composed of BN support and platinum have been prepared using two routes: from a mixture of precursor or by impregnation of a BN powder leading to very different catalysts.