Comparative 11A structure of two molluscan hemocyanins from 3D cryo-electron microscopy

Hemocyanins are giant extracellular proteins that transport oxygen in the hemolymph of many molluscs. Molluscan hemocyanins are cylindrical decamers or didecamers of a 350-400 kDa subunit that contains seven or eight different covalently linked globular functional units (FUs), arranged in a linear manner. Each FU carries a single copper active site and reversibly binds one dioxygen molecule. As a consequence, the decamer can carry up to 70 or 80 O(2) molecules. Although complete sequence information is now available from several molluscan hemocyanins, many details of the quaternary structure are still unclear, including the topology of the 10 subunits within the decamer. Here we show 3D reconstructions from cryo-electron micrographs of the hemocyanin decamer of Nautilus pompilius (Cephalopoda) and Haliotis tuberculata (Gastropoda) at a resolution of 11A (FSC(1/2-bit) criterion). The wall structure of both hemocyanins is very similar and shows, as in previous reconstructions, three tiers with 20 functional units each that encircle the cylinder wall, and the 10 oblique minor and major wall grooves. However, the six types of wall FUs of the polypeptide subunit, termed a-b-c-d-e-f, are now for the first time individually discernable by their specific orientation, shape, and connections. Also, the internal collar complex of the decamers shows superior resolution which, in this case, reveals striking differences between the two hemocyanins. The five arcs (FU-g pairs) of the central collar (in both hemocyanins) and the five slabs (FU-h pairs) of the peripheral collar (only present in Haliotis hemocyanin), as well as their connections to the wall and to each other are now more clearly defined. The arc is attached to the wall through a feature termed the anchor, a previously undescribed structural element of the hemocyanin wall.     

Synthesis,thermal analysis,and spectroscopic and structural characterizations of tetranuclear nickel(II) cubane-type clusters with 2-hydroxybenzaldehydes or 2-hydroxyphenones

In this study, three novel tetranuclear nickel(II) cubane-type clusters with the general formula [Ni₄(L)₄(μ₃-CH₃O)₄(CH₃OH)₄] [L: the anion of 5-methyl-2-hydroxybenzaldehyde (1), 2-hydroxypropiophenone (2), and 2-hydroxybenzophenone (3)] were synthesized and characterized by single-crystal X-ray diffraction analysis. The crystal structure of each compound contains a tetranuclear cubane core [Ni₄O₄] based on an approximately cubic array of altering nickel and oxygen atoms with intracluster metal–metal separations of 3.04–3.14 Å. Each Ni(II) atom is surrounded by two oxygen atoms from the ligand (L) and by the μ₃-CH₃O oxygen atom that bridges three Ni atoms of the cubane core. The coordination sphere of Ni is completed with one methanol molecule and making six-coordinate with a distorted octahedral geometry. These complexes were characterized also by spectroscopy (IR and UV–Vis). Simultaneous TG/DTG–DTA techniques were used to analyze their thermal behavior under inert atmosphere, with particular attention to determine their thermal degradation pathways, which was found to be a multi-step decomposition accompanied by the release of the ligand molecules. Finally, the kinetic analysis of the decomposition processes was performed for the first step of complex (3), since only this verifies the requirement of applying an isoconversional method like Kissinger–Akahira–Sunose (KAS). For this step, we found the average value E _a = 107.8 ± 4.5 kJ mol^?1.     

Direct Evidence for Intermolecular Oxidative Addition of σ(SiSi) Bonds to Gold

Oxidative addition plays a major role in transition‐metal catalysis, but this elementary step remains very elusive in gold chemistry. It is now revealed that in the presence of GaCl₃, phosphine gold chlorides promote the oxidative addition of disilanes at low temperature. The ensuing bis(silyl) gold(III) complexes were characterized by quantitative ³¹P and ²⁹Si NMR spectroscopy. Their structures (distorted Y shape) and the reaction profile of σ(Si? Si) bond activation were analyzed by DFT calculations. These results provide evidence for the intermolecular oxidative addition of σ(Si? Si) bonds to gold and open promising perspectives for the development of new gold‐catalyzed redox transformations.     

Ultra‐Small Plutonium Oxide Nanocrystals: An Innovative Material in Plutonium Science

Apart from its technological importance, plutonium (Pu) is also one of the most intriguing elements because of its non‐conventional physical properties and fascinating chemistry. Those fundamental aspects are particularly interesting when dealing with the challenging study of plutonium‐based nanomaterials. Here we show that ultra‐small (3.2±0.9 nm) and highly crystalline plutonium oxide (PuO₂) nanocrystals (NCs) can be synthesized by the thermal decomposition of plutonyl nitrate ([PuO₂(NO₃)₂] ? 3 H₂O) in a highly coordinating organic medium. This is the first example reporting on the preparation of significant quantities (several tens of milligrams) of PuO₂ NCs, in a controllable and reproducible manner. The structure and magnetic properties of PuO₂ NCs have been characterized by a wide variety of techniques (powder X‐ray diffraction (PXRD), X‐ray absorption fine structure (XAFS), X‐ray absorption near edge structure (XANES), TEM, IR, Raman, UV/Vis spectroscopies, and superconducting quantum interference device (SQUID) magnetometry). The current PuO₂ NCs constitute an innovative material for the study of challenging problems as diverse as the transport behavior of plutonium in the environment or size and shape effects on the physics of transuranium elements.     

Air‐Stable Solid Aryl and Heteroaryl Organozinc Pivalates: Syntheses and Applications in Organic Synthesis

A wide range of air‐stable, solid, polyfunctional aryl and heteroarylzinc pivalates were efficiently prepared by either magnesium insertion or Hal/Mg exchange followed by transmetalation with Zn(OPiv)₂ (OPiv=pivalate). By reducing the amount of LiCl the air stability could be significantly enhanced compared with previously prepared reagents. An alternative route is directed magnesiation using TMPMgCl ? LiCl (TMP=2,2,6,6‐tetramethylpiperidyl) followed by transmetalation with Zn(OPiv)₂ or, for very sensitive substrates, direct zincation by using TMPZnOPiv. These zinc reagents not only show excellent stability towards air, but they also undergo a broad range of C?C bond‐formation reactions, such as allylation and carbocupration reactions, as well as addition to aldehydes and 1,4‐addition reactions. Acylation reactions can be performed by using an excess of TMSCl to overcome side reactions of the omnipresent pivalate anion.     

Switchable dielectric permittivity with temperature and Dc-bias in a semifluorinated azobenzene derivative

The thermodynamic, optical, structural, and dynamic properties of the semifluorinated (E)-1-(4-octylphenyl)-2-(4-(perfluorooctyl)phenyl)diazene (4) and the corresponding (E)-1,2-bis(4-octylphenyl)diazene (5) have been studied with differential scanning calorimetry, polarizing optical microscopy, X-ray diffraction, and dielectric spectroscopy. 4 combines the azobenzene properties with the fluorophobic effect and gives rise to a responsive material with a temperature and dc-bias-driven switchable dielectric permittivity within the narrower nematic phase. This is caused by the nematic potential that inevitably brings some fluorocarbon chains in proximity to the hydrocarbon chains from adjacent molecules. Frustration is alleviated by reducing the nematic-to-isotropic transition temperature and by increasing the crystalline-to-nematic transition temperature, thus limiting the stability of the nematic phase. Unlike the normal isotropic phase of compound 5, the isotropic phase of compound 4 contains dipoles with short-range orientation correlations. Optimizing the type of interactions may result in materials with applications as molecular switches and electrooptic devices.     

Tumor Hypoxia Heterogeneity Affects Radiotherapy: Inverse-Percolation Shell-Model Monte Carlo Simulations

Tumor hypoxia was discovered a century ago, and the interference of hypoxia with all radiotherapies is well known. Here, we demonstrate the potentially extreme effects of hypoxia heterogeneity on radiotherapy and combination radiochemotherapy. We observe that there is a decrease in hypoxia from tumor periphery to tumor center, due to oxygen diffusion, resulting in a gradient of radiative cell-kill probability, mathematically expressed as a probability gradient of occupied space removal. The radiotherapy-induced break-up of the tumor/TME network is modeled by the physics model of inverse percolation in a shell-like medium, using Monte Carlo simulations. The different shells now have different probabilities of space removal, spanning from higher probability in the periphery to lower probability in the center of the tumor. Mathematical results regarding the variability of the critical percolation concentration show an increase in the critical threshold with the applied increase in the probability of space removal. Such an observation will have an important medical implication: a much larger than expected radiation dose is needed for a tumor breakup enabling successful follow-up chemotherapy. Information on the TME’s hypoxia heterogeneity, as shown here with the numerical percolation model, may enable personalized precision radiation oncology therapy.     

Algorithms with high order convergence speed for blind source extraction

A rigorous convergence analysis for the fixed point ICA algorithm of Hyvärinen and Oja is provided and a generalization of it involving cumulants of an arbitrary order is presented. We consider a specific optimization problem OP(p), p>3, integer, arising from a Blind Source Extraction problem (BSE) and prove that every local maximum of OP(p) is a solution of (BSE) in sense that it extracts one source signal from a linear mixture of unknown statistically independent signals. An algorithm for solving OP(p) is constructed, which has a rate of convergence p?1.