A physical organic mechanistic approach to understanding the complex reaction network of hemostasis (blood clotting)

This review focuses on how the mechanistic approach of physical organic chemistry can be used to elucidate the mechanisms behind complex biochemical networks. The dynamics of biochemical reaction networks is difficult to describe by considering their individual reactions, just as the dynamics of organic reactions is difficult to describe by considering individual electrons and atomic nuclei. Physical organic chemists have developed a useful set of tools to predict the outcome of organic reactions by separating the interacting molecules into modules (functional groups), and defining general rules for how these modules interact (mechanisms). This review shows how these tools of physical organic chemistry may be used to describe reaction networks. In addition, it describes the application of these tools to develop a mechanistic understanding of the dynamics of the complex network of hemostasis, which regulates blood clotting. Copyright © 2007 John Wiley & Sons, Ltd.     

Thermoelectric properties of CoSb3 with maize‐like structure

Maize‐like CoSb₃ powders were obtained via the chemical alloying method. After the consolidation of the nanopowder using hot press, the CoSb₃ compact shows a higher Seebeck coefficient and lower thermal conductivity. For the investigated CoSb₃, a ZT of 0.15 at 673 K is shown. Though the achieved ZT does not reach the optimal value (0.17 to 0.18) for pure CoSb₃, due to its lower electrical conductivity, the novel structure fabrication provides an interesting and promising approach to enhancing the thermoelectric performance. (© 2007 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Offdiagonal complexity: A computationally quick complexity measure for graphs and networks

A vast variety of biological, social, and economical networks shows topologies drastically differing from random graphs; yet the quantitative characterization remains unsatisfactory from a conceptual point of view. Motivated from the discussion of small scale-free networks, a biased link distribution entropy is defined, which takes an extremum for a power-law distribution. This approach is extended to the node–node link cross-distribution, whose nondiagonal elements characterize the graph structure beyond link distribution, cluster coefficient and average path length. From here a simple (and computationally cheap) complexity measure can be defined. This offdiagonal complexity (OdC) is proposed as a novel measure to characterize the complexity of an undirected graph, or network. While both for regular lattices and fully connected networks OdC is zero, it takes a moderately low value for a random graph and shows high values for apparently complex structures as scale-free networks and hierarchical trees. The OdC approach is applied to the Helicobacter pylori protein interaction network and randomly rewired surrogates.     

Experimental implementation of a low-frequency global sound equalization method based on free field propagation

An experimental implementation of a global sound equalization method in a rectangular room using active control is described in this paper. The main purpose of the work has been to provide experimental evidence that sound can be equalized in a continuous three-dimensional region, the listening zone, which occupies a considerable part of the complete volume of the room. The equalization method, based on the simulation of a progressive plane wave, was implemented in a room with inner dimensions of 2.70 m × 2.74 m × 2.40 m. With this method, the sound was reproduced by a matrix of 4 × 5 loudspeakers in one of the walls. After traveling through the room, the sound wave was absorbed on the opposite wall, which had a similar arrangement of loudspeakers, by means of active control. A set of 40 digital FIR filters was used to modify the original input signal before it was fed to the loudspeakers, one filter for each transducer. The optimal arrangement of the loudspeakers and the maximum frequency that can be equalized is analyzed theoretically in this paper. The presented experimental results show that sound equalization was possible from 10 Hz to approximately 425 Hz in the listening zone. A flat frequency response with deviations within ±5 decibels from the desired value was achieved. A higher demanding performance with deviations within ±1.5 decibels from a flat frequency response was attained in the interval between 20 Hz and 280 Hz. At the same time, the impulse response was quite well approximated to a delayed delta function in the listening zone. Examples of the spatial distribution of the sound field are also shown.     

Evidence for a wide extra-astrocytic distribution of S100B in human brain

Background  

S100B is considered an astrocytic in-situ marker and protein levels in cerebrospinal fluid (CSF) or serum are often used as biomarker for astrocytic damage or dysfunction. However, studies on S100B in the human brain are rare. Thus, the distribution of S100B was studied by immunohistochemistry in adult human brains to evaluate its cell-type specificity.     

Kv1.1 null mice have enlarged hippocampus and ventral cortex

Background  

Mutations in the Shaker-like voltage-gated potassium channel Kv1.1 are known to cause episodic ataxia type 1 and temporal lobe epilepsy. Mice that express a malfunctional, truncated Kv1.1 (BALB/cByJ-Kv1.1 ^mceph/mceph ) show a markedly enlarged hippocampus and ventral cortex in adulthood.     

New rare earth-rich aluminides and indides with cubic Gd4RhIn-type structure

Abstract  

The series of rare earth metal (RE)-rich intermetallics RE ₄ TAl and RE ₄ TIn (T = Ru, Rh, Ir) were synthesized by induction melting of the elements in sealed tantalum tubes. These compounds crystallize with the cubic Gd₄RhIn-type structure, space group F[`4]3mF\bar{4}3m. The structures of eight crystals (including the isotypic compounds Ce₄RuMg and Ce₄RuCd) have been refined from X-ray single-crystal diffractometer data. The structures are composed of condensed RE ₆ T trigonal prisms which form a rigid network with adamantane-like topology. Large cavities within these networks are filled with empty RE ₆ octahedra and Al₄, In₄, Mg₄, or Cd₄ tetrahedra, respectively. Some of the RE ₄ TAl and RE ₄ TIn show small homogeneity ranges that result from small degrees of Al/T and In/T mixing on the 16e sites. All cerium compounds show small anomalies in the plots of the cell volumes. This is confirmed by temperature-dependent magnetic susceptibility measurements. Ce₄RuMg, Ce₄RuCd, Ce₄RuAl, and Ce₄RuIn show intermediate cerium valence and no magnetic ordering down to 3 K. Ce₄RhAl shows essentially trivalent cerium.