Oxidation of methionine residues in aqueous solutions: free methionine and methionine in granulocyte colony-stimulating factor

The free energy barriers and a mechanism of the oxidation of the amino acid methionine in water and in granulocyte colony-stimulating factor (G-CSF) are analyzed via combined quantum mechanical and molecular mechanical (QM/MM) methods, constrained molecular dynamics, and committor probability calculations. The computed free energy barrier of free methionine amino acid is very close to the measured value (14.7 +/- 1.2 versus 15.5 +/- 0.02 kcal/mol). The reaction coordinate was found to be the difference between the O-O bond of H2O2 and the S-O bond, where the S is the sulfur atom of the methionine residue. It was confirmed by computing the committor probability distribution and the distribution of constrained forces that this coordinate is not coupled to the activation of other degrees of freedom. The computed free energies of the oxidation of methionine residues in G-CSF indicate that the protein environment has insignificant effects on the reaction barriers of oxidation. This result further validates our proposal that the access of solvent to methionine sites, as measured by the two-shell water coordination number, governs the kinetics of the oxidation reaction of methionine groups in a protein molecule. We also found that the number of hydrogen bonds between the distal oxygen of H2O2 and the water molecules near the methionine increases along the reaction coordinate as oxidation progresses, indicating that the charge separation developed during the oxidation by H2O2 is stabilized by specific interactions with water molecules, such as hydrogen bonding.     

Highly enantioselective hydrogenation of aromatic-heteroaromatic ketones

Asymmetric hydrogenation of ketone 1 using trans-RuCl(2)[(R)-xylbinap][(R)-daipen] (3) as a catalyst afforded secondary alcohol 2 quantitatively and in 99.4% ee. Further exploration of the effect of the thiazole ring substitution revealed that the catalyst was highly effective for the enantioselective hydrogenation of 5-benzoyl thiazoles, which afforded corresponding alcohols in 92-99% ee. The same protocol was applicable to a variety of aromatic-heteroaromatic ketones to generate secondary alcohols in excellent enantioselectivities. [reaction: see text]     

Automated system for simultaneous analysis of delta(13)C, delta(18)O and CO(2) concentrations in small air samples

In this paper we present an automated system for simultaneous measurement of CO(2) concentration, delta(13)C and delta(18)O from small (<1 mL) air samples in a short period of time (approximately 1 hour). This system combines continuous-flow isotope ratio mass spectrometry (CF-IRMS) and gas chromatography (GC) with an inlet system similar to conventional dual-inlet methods permitting several measurement cycles of standard and sample air. Analogous to the dual-inlet method, the precision of this system increases with the number of replicate cycles measured. The standard error of the mean for a measurement with this system is 0.7 ppm for the CO(2) concentration and 0.05 per thousand for the delta(13)C and delta(18)O with four replicate cycles and 0.4 ppm and 0.03 per thousand respectively with nine replicate cycles. The mean offset of our measurements from NOAA/CMDL analyzed air samples was 0.08 ppm for the CO(2) concentration, 0.01 per thousand for delta(13)C and 0.00 per thousand for delta(18)O. A specific list of the parts and operation of the system is detailed as well as some of the applications for micrometeorological and ecophysiological applications.     

Mechanistic study of enantiomeric recognition with native gamma-cyclodextrin by capillary electrophoresis,reversed-phase liquid chromatography,nuclear magnetic resonance spectroscopy,electrospray mass spectrometry and circular dichroism techniques

The possible mechanisms for the chiral recognition of 2(S)-(3,5-bis-trifluoromethyl-phenyl)-2-[3(S)-(4-fluorophenyl)-4-(1H-[1,2,4]triazol-3-ylmethyl)-morpholin-2(R)-yloxy]-ethanol (compound A) and its enantiomer with native gamma-cyclodextrin (gamma-CD) were investigated using capillary electrophoresis (CE), reversed-phase liquid chromatography (RPLC), proton (1H), fluorine (19F) and carbon (13C) nuclear magnetic resonance spectroscopy (NMR), electrospray mass spectrometry (ESI-MS) and circular dichroism (CD). All experiments provided clear evidence of the formation of diastereomeric complexes between the enantiomers and gamma-CD. Proton, fluorine and carbon NMR spectra suggested that both aromatic rings, with mono-fluoro and bis-tri-fluoro functional groups, on the guest molecule were partially included into the cavity of the gamma-CD. ESI-MS spectra indicated that the diastereomeric complexes have a 1:1 stoichiometric ratio. The binding constants of the diastereomeric complexes obtained by CE, RPLC and CD were compared. The effects of the gamma-CD concentration, organic modifiers and temperature on the CE-chiral separation were also investigated.     

Fluorescence resonance energy transfer between a quantum dot donor and a dye acceptor attached to DNA

We show that direct coupling of a dye-labelled DNA (acceptor) to a quantum dot (QD) donor significantly reduces the donor-acceptor distance and improves the FRET efficiency: a highly efficient FRET (approximately 88%) at a low acceptor-to-donor ratio of 2 has been achieved at the single-molecule level.     

Rapid deposition of triangular silver nanoplates on planar surfaces: application to metal-enhanced fluorescence

A simple and rapid wet-chemical technique for the deposition of silver triangles on conventional glass substrates, which alleviates the need for lithography, has been developed. The technique is based on the seed-mediated cetyltrimethylammonium-bromide-directed growth of silver triangles on glass surfaces, where smaller spherical silver seeds that were attached to the surface were subsequently converted and grown into silver triangles in the presence of a cationic surfactant and silver ions. The size of the silver triangles was controlled by sequential immersion of silver seed-coated glass substrates into a growth solution and by the duration time of immersion. Atomic force microscopy studies revealed that the size of the silver triangles ranged between 100 and 500 nm. Interestingly, these new surfaces are a significant improvement over traditional silver island films for applications in metal-enhanced fluorescence. A routine 16-fold enhancement in emission intensity was typically observed, for protein-immobilized indocyanine green, with a relatively very low loading density of silver triangles on the glass surface.     

Oxidation Kinetics of the Potent Insulin Mimetic Agent Bis(maltolato)oxovanadium(IV) (BMOV) in Water and in Methanol

The kinetics of oxidation of bis(maltolato)oxovanadium(IV), BMOV or VO(ma)(2), by dioxygen have been studied by UV-vis spectroscopy in both MeOH and H(2)O media. The VO(ma)(2):O(2) stoichiometry was 4:1. In aqueous solution, the pH-dependent rate of the VO(ma)(2)/O(2) reaction to generate cis-[VO(2)(ma)(2)](-) is attributed to the deprotonation of coordinated H(2)O, the deprotonated species [VO(ma)(2)(OH)](-) being more easily oxidized (k(OH) = 0.39 M(-)(1) s(-)(1), 25 degrees C) than the neutral form VO(ma)(2)(H(2)O) (k(H)()2(O) = 0.08 M(-)(1) s(-)(1), 25 degrees C). The activation parameters for the two second-order reactions in aqueous solution were deduced from variable temperature kinetic measurements. In MeOH, VO(ma)(2) was oxidized by dioxygen to cis-VO(OMe)(ma)(2), whose structure was characterized by single-crystal X-ray diffraction; the crystals were monoclinic, C2/c, with a = 28.103(1) ?, b = 7.721(2) ?, c = 13.443(2) ?, beta = 94.290(7) degrees, and Z = 8. The structure was solved by Patterson methods and was refined by full-matrix least-squares procedures to R = 0.043 for 1855 reflections with I >/= 3sigma(I). The kinetic results are consistent with a mechanism involving an attack of O(2) at the V(IV) center, followed by the formation of radicals and H(2)O(2) as transient intermediates.     

Tetracyanoborate salts M[b(CN)4] with M = singly charged cations: properties and structures

A series of tetracyanoborate salts M[B(CN)4] with the singly charged cations of Li+, Na+, Rb+, Cs+, [NH4]+, Tl+, and Cu+ as well as the THF solvate tetracyanoborates Na[B(CN)4] x THF and [NH4][B(CN)4] x THF were synthesized and their X-ray structures, vibrational spectra, solubilities in water, and thermal stabilities determined and compared with already known M[B(CN)4] salts. Crystallographic data for these compounds are as follows: Na[B(CN)4], cubic, Fd3m, a = 11.680(1) A, Z= 8; Li[B(CN)4], cubic, P43m, a = 5.4815(1) A, Z= 1; Cu[B(CN)4], cubic, P43m, a = 5.4314(7) A, Z= 1; Rb[B(CN)4], tetragonal, /4(1)/a, a = 7.1354(2) A, c= 14.8197(6) A, Z= 4; Cs[B(CN)4], tetragonal, /4(1)/a, a = 7.300(2) A, c = 15.340(5) A, Z= 4; [NH4][B(CN)4], tetragonal, /4(1)/a, a = 7.132(1) A, c = 14.745(4) A, Z= 4; Tl[B(CN)4], tetragonal, /4(1)/a, a = 7.0655(2) A, c = 14.6791(4) A, Z= 4; Na[B(CN)4] x THF, orthorhombic, Pnma, a = 13.908(3) A, b = 9.288(1) A, c = 8.738(1) A, Z= 4; [NH4][B(CN)4] x THF, orthorhombic, Pnma, a = 8.831(1) A, b = 9.366(2) A, c = 15.061(3) A, Z= 4. The cubic Li+, Na+, and Cu+ salts crystallize in a structure consisting of two interpenetrating independent tetrahedral networks of M cations and [B(CN)4]- ions. The compounds with the larger countercations (Rb+, Cs+, Tl+, and [NH4]+) crystallize as tetragonal, also with a network arrangement. The sodium and ammonium salts with the cocrystallized THF molecules are both orthorhombic but are not isostructural. In the vibrational spectra the two CN stretching modes A1 and T2 coincide in general and the band positions are a measure for the strength of the interionic interaction. An interesting feature in the Raman spectrum of the copper salt is the first appearance of two CN stretching modes.