Proton transfer reactions for improved peptide characterisation

The combination of deprotonation (via ion/molecule and ion/ion reactions) and low-energy collision-induced dissociation (CID) has been explored for the enhanced characterisation of tryptic peptides via access to different precursor charge states. This approach allows instant access to fragmentation properties of singly and doubly protonated precursors (arising from the availability of mobile protons) in a single experiment. Considering both charge states extended our base of structurally informative data (in comparison with considering just a single charge state) due to generation of additional sequence ions and by obtaining supplementary structural information derived from selective cleavages. Roughly 37% of combined data sets (CID spectra of doubly and singly charged precursor) showed a greater database identification confidence than each set alone. Moreover, comparison between a number of sequence ions of the singly charged precursor and the doubly charged precursor provided a mean of distinguishing the two classes of tryptic peptides (arginine or lysine containing).     

Two-dimensional optical feedback control of Euglena confined in closed-type microfluidic channels

We examined two-dimensional (2D) optical feedback control of phototaxis flagellate Euglena cells confined in closed-type microfluidic channels (microaquariums), and demonstrated that the 2D optical feedback enables the control of the density and position of Euglena cells in microaquariums externally, flexibly, and dynamically. Using three types of feedback algorithms, the density of Euglena cells in a specified area can be controlled arbitrarily and dynamically, and more than 70% of the cells can be concentrated into a specified area. Separation of photo-sensitive/insensitive Euglena cells was also demonstrated. Moreover, Euglena-based neuro-computing has been achieved, where 16 imaginary neurons were defined as Euglena-activity levels in 16 individual areas in microaquariums. The study proves that 2D optical feedback control of photoreactive flagellate microbes is promising for microbial biology studies as well as applications such as microbe-based particle transportation in microfluidic channels or separation of photo-sensitive/insensitive microbes.     

Treasures from the Free Radical Renaissance Period--miscellaneous hexenyl radical kinetic data

Rate constant data and Arrhenius parameters have been determined for a series of substituted hexenyl radicals of differing electronic and steric demand. Electron-withdrawing groups (CF(3), CO(2)Et) directly attached to the radical centre slightly accelerate 5-exo ring-closure (k(cis) + k(trans) ～ 2.1 × 10(5) s(-1) at 25°) relative to donating groups (OMe; 1.6 × 10(5) s(-1) at 25°). Sterically demanding groups (tert-Bu), as expected, slow the cyclization process (1 × 10(5) s(-1)). These observations are consistent with subtle changes in activation energy for 5-exo ring-closure. Interestingly, the nature of the solvent would appear to have a significant influence on this chemistry with the cis/trans stereoselectivity sometimes improved as the solvent polarity is increased. Except for the system containing the CF(3) (electron-withdrawing) group which displays an increase in the cyclization/capture rate constant (k(c)/k(H)), a general decrease in the k(c)/k(H) ratio as solvent polarity is increased is noted; these changes have been speculated to arise mainly from changes in k(H) in the various solvents employed.     

Synthesis of a library of oligothiophenes and their utilization as fluorescent ligands for spectral assignment of protein aggregates

Molecular probes for selective identification of protein aggregates are important to advance our understanding of the molecular pathogenesis underlying protein aggregation diseases. Here we report the chemical design of a library of anionic luminescent conjugated oligothiophenes (LCOs), which can be utilized as ligands for detection of protein aggregates. Certain molecular requirements were shown to be necessary for detecting (i) early non-thioflavinophilic protein assemblies of Aβ1-42 and insulin preceding the formation of amyloid fibrils and (ii) for obtaining distinct spectral signatures of the two main pathological hallmarks observed in human Alzheimer's diease brain tissue (Aβ plaques and neurofibrillary tangles). Our findings suggest that a superior anionic LCO-based ligand should have a backbone consisting of five to seven thiophene units and carboxyl groups extending the conjugated thiophene backbone. Such LCOs will be highly useful for studying the underlying molecular events of protein aggregation diseases and could also be utilized for the development of novel diagnostic tools for these diseases.     

Chlorometallate and palladium cluster complexes of wide-span diimine and diamine ligands

Diimine and diamine ligands that are unable to coordinate to a single metal favour the formation of unusual, high-nuclearity Zn chlorometallate and palladium chloride complexes.     

When is an imine not an imine? Unusual reactivity of a series of Cu(II) imine-pyridine complexes and their exploitation for the Henry reaction

In this paper we report the synthesis and solid-state structures for a series of pyridine based Cu(II) complexes and preliminary data for the asymmetric Henry reaction. Interestingly, the solid-state structures indicate the incorporation of an alcohol into one of the imine groups of the ligand, forming a rare α-amino ether group. The complexes have been studied via single crystal X-ray diffraction, EPR spectroscopy and mass spectrometry. Intriguingly, it has been observed that the alcohol only adds to one of the imine moieties. Density functional theory (DFT) calculations have also been employed to rationalise the observed structures. The Cu(II) complexes have been tested in the asymmetric Henry reaction (benzaldehyde + nitromethane or nitroethane) with ee's up to 84% being achieved as well as high conversions and modest diastereoselectivities.     

Rhenium ethoxy- and hydroxycarbene complexes with thiophene substituents

Reaction of mono- and dilithiated thiophene (a), bithiophene (b) and 2,5-dibromothiophene (c) with [Re(2)(CO)(10)] afforded, after subsequent alkylation with triethyloxonium tetrafluoroborate, tetra- and binuclear Fischer carbene complexes, [Re(2)(CO)(9){C(OEt){C(4)H(2)S}(n)X}], n = 1, X = H (1a); n = 2, X = H (1b); n = 1, X = Br (1c); n = 1, X = C(OEt)Re(2)(CO)(9), (2a); n = 2, X = C(OEt)Re(2)(CO)(9) (2b), as major products. The dirhenium acylate intermediates from this reaction not only gave the expected novel ethoxycarbene complexes with alkylation but after rhenium-rhenium bond breaking afforded a number of minor products. The (1)H NMR spectrum of the crude reaction mixture revealed the formation of four metal hydride complexes and aldehydes. Protonation with HBF(4) instead of alkylation with Et(3)OBF(4) significantly increased the yields of the hydride complexes, which enabled the positive identification of three of these complexes. In addition to the known compounds [Re(CO)(5)H] and [Re(3)(CO)(14)H] (3), a unique complex displaying a hydroxycarbene fragment connected to an acyl fragment via an O-H···O hydrogen bond and a Re···H···Re bond linking the two Re centers, [(μ-H){Re(CO)(4)C(OH){C(4)H(2)S}(n)H}{Re(CO)(4)C(O){C(4)H(2)S}(n)H}], n = 1 (4a) or n = 2 (4b), were isolated. The formation of thiophene aldehydes, H{C(O)}(m){C(4)H(2)S}(n)C(O)H (m = 0 or 1 and n = 1 or 2), were observed and the novel monocarbene complexes with terminal aldehyde groups, [Re(2)(CO)(9){C(OEt){C(4)H(2)S}(n)C(O)H}], n = 1 (5a) and n = 2 (5b) could be isolated. A higher yield of 5b was obtained after stirring crystals of 2b in wet THF. The crystal structures of 1a, 2a, 4a and 5b are reported.     

2-[1-(2,6-Dibenzhydryl-4-methylphenylimino)ethyl]-6-[1-(arylimino)ethyl]pyridylcobalt(II) dichlorides: synthesis, characterization and ethylene polymerization behavior

A series of unsymmetrical 2,6-bis(imino)pyridylcobalt(II) complexes, {2-[2,6-(CH(C(6)H(5))(2))(2)-4-Me-C(6)H(2)N==C(CH(3))]-6-(2,6-R(1)(2)-4-R(2)-C(6)H(2)N==CCH(3))-C(5)H(3)NCoCl(2)} where R(1) = Me, Et or (i)Pr, R(2) = H or Me, together with the new symmetrical complex 2,6-[2,6-(CH(C(6)H(5))(2))(2)-4-Me-C(6)H(2)N==C(CH(3))](2)-C(5)H(3)NCoCl(2), were synthesized. All of the compounds were fully characterized by (1)H NMR and IR spectroscopy, as well as by elemental analysis. The molecular structures of Co1 (R(1) = Me, R(2) = H) and Co5 (R(1) = Et, R(2) = Me) were further confirmed by single crystal X-ray diffraction, which indicated that the cobalt centres were penta-coordinate with a pseudo square-pyramidal geometry. Upon treatment with MAO or MMAO, these cobalt pre-catalysts exhibited higher activities than any previously reported cobalt pre-catalysts, with values as high as 4.64 × 10(6) g PE mol(-1)(Co) h(-1) for ethylene polymerization at atmospheric pressure. The polyethylenes obtained were of high molecular weight and narrow molecular weight distribution.     

Total synthesis of (+)-grandifloracin by iron complexation of a microbial arene oxidation product

(+)-Grandifloracin was synthesized from sodium benzoate by means of a dearomatizing dihydroxylation that proceeds with unusual regioselectivity. Iron diene complexes formed from the arene oxidation product permit the use of otherwise inaccessible transformations. The synthetic material was shown to be antipodal to the natural product, thus determining the absolute configuration of grandifloracin for the first time.