Spin-trapping of oxygen free radicals in chemical and biological systems: new traps, radicals and possibilities

The choice of the spin-trap that is to be applied in any EPR study represents the crossroad between a comprehensive investigation and an "ordinary" quantification of production of radicals. So, the scope of our study was to compare the performance of different spin-traps for qualitative analysis of radical-generating systems, and their ability to recognize previously unnoticed radicals. In addition, we present a brief account of the difficulties involved in the detection of oxygen-centered radicals in chemical and biological systems accompanied by the rationale for using the EPR spin-trapping technique in quantitative studies of such reactive species. Certain technical aspects of EPR experiments related to efficient trapping of free radicals in biochemical systems are also discussed. As an example we present here results obtained using EPR spectroscopy and the spin-trap DEPMPO, which show that the Fenton reaction, as well as various biological systems generate a previously unappreciated hydrogen (*H) atom.     

Benzofuran-derived cyclic beta-amino acid scaffold for building a diverse set of flavonoid-like probes and the discovery of a cell motility inhibitor

We report here a practical, enantioselective synthesis of benzofuran-derived, cyclic trans-beta-amino acid scaffold. In two cases, tricyclic derivatives having six- and eight-membered unsaturated lactams were obtained from this versatile scaffold. To explore the biological applications, these compounds were subjected to cell-based assays, using NIH3T3 mouse cells to examine their potency as cell motility inhibitors and identified 18 as a potent cell motility inhibitor (IC50 approximately 40 microM in chamber cell migration assay).     

The H2O2+OH-->HO2+H2O reaction in aqueous solution from a charge-dependent continuum model of solvation

We applied our recently developed protocol of the conductorlike continuum model of solvation to describe the title reaction in aqueous solution. The model has the unique feature of the molecular cavity being dependent on the atomic charges in the solute and can be extended naturally to transition states and reaction pathways. It was used to calculate the reaction energetics and reaction rate in solution for the title reaction. The rate of reaction calculated using canonical variational transition state theory in the context of the equilibrium solvation path approximation, and including correction for tunneling through the small curvature approximation, was found to be 3.6 x 10(6) M(-1) s(-1), significantly slower than in the gas phase in accord with experiment. These results suggest that the present protocol of the conductorlike continuum model of solvation with the charge-dependent cavity definition captures qualitatively and quantitatively the solvation effects at transition states and allows for quantitative estimates of reaction rates in solutions.     

Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings

The aromaticity of the chelate rings of acetylacetonato (acac) and o-benzoquinonediimine (bqdi) ligands was investigated theoretically by calculating nucleus-independent chemical shifts (NICS). The calculations were done for the complexes with various metals and various other ligands. The results show that acac chelate rings in none of the complexes satisfy this magnetic criterion for aromaticity. According to the results for bqdi chelate rings, there is only the Ru2+-bqdi chelate ring with large negative NICS values, indicating possible aromaticity by magnetic criterion.     

Heterolysis of H2 Across a Classical Lewis Pair, 2,6‐Lutidine⋅BCl3: Synthesis,Characterization, and Mechanism

We report that 2,6‐lutidine?trichloroborane (Lut?BCl₃) reacts with H₂ in toluene, bromobenzene, dichloromethane, and Lut solvents producing the neutral hydride, Lut?BHCl₂. The mechanism was modeled with density functional theory, and energies of stationary states were calculated at the G3(MP2)B3 level of theory. Lut?BCl₃ was calculated to react with H₂ and form the ion pair, [LutH⁺][HBCl₃^?], with a barrier of ΔH^≠=24.7 kcal mol^?1 (ΔG^≠=29.8 kcal mol^?1). Metathesis with a second molecule of Lut?BCl₃ produced Lut?BHCl₂ and [LutH⁺][BCl₄^?]. The overall reaction is exothermic by 6.0 kcal mol^?1 (Δ_rG°=?1.1). Alternate pathways were explored involving the borenium cation (LutBCl₂⁺) and the four‐membered boracycle [(CH₂{NC₅H₃Me})BCl₂]. Barriers for addition of H₂ across the Lut/LutBCl₂⁺ pair and the boracycle B?C bond are substantially higher (ΔG^≠=42.1 and 49.4 kcal mol^?1, respectively), such that these pathways are excluded. The barrier for addition of H₂ to the boracycle B?N bond is comparable (ΔH^≠=28.5 and ΔG^≠=32 kcal mol^?1). Conversion of the intermediate 2‐(BHCl₂CH₂)‐6‐Me(C₅H₃NH) to Lut?BHCl₂ may occur by intermolecular steps involving proton/hydride transfers to Lut/BCl₃. Intramolecular protodeboronation, which could form Lut?BHCl₂ directly, is prohibited by a high barrier (ΔH^≠=52, ΔG^≠=51 kcal mol^?1).     

Exploring new chemical space by stereocontrolled diversity-oriented synthesis

Natural products that act as highly specific, small-molecule protein-binding agents and as modulators of protein-protein interactions are highly complex and exhibit functional groups with three-dimensional and stereochemical diversity. The complex three-dimensional display of chiral functional groups appears to be crucial for exhibiting specificity in protein binding and in differentiating between closely related proteins. The development of methods that allow a high-throughput access to three-dimensional, skelatally complex, polycyclic compounds having few asymmetric diversity sites is essential and a highly challenging task. In the postgenomic chemical biology age, in which there is a great desire to understand protein-protein interactions and to dissect protein networking-based signaling pathways by small molecules, the need for developing "stereocontrolled, diversity-oriented synthesis" methods to generate natural product-like libraries is of utmost importance.     

Thermally activated and light-induced metal ion complexation of 5′-(hydroxy)spiroindolinonaphthooxazines in polar solvents

Chelation with Al(III), Fe(II) or Cu(II) of the open photomerocyanine form obtained under steady irradiation of spiroindolinonaphthooxazines, with a hydroxyl group at the 5′ position in the naphthooxazine moiety, induces a slight hypsochromic shift of its visible absorption band and increases the lifetime of this form, slowing down its thermal bleaching in the dark (rate constant  10⁻³ s⁻¹). Complexation with Al(III), Fe(II) or Cu(II) allows the spiroindolinonaphthooxazines to isomerize to their open coloured form even under dark conditions giving a complex spectroscopically identical to the photoinduced product. The activation energy of thermal complexation is independent of the metal ion which implies the ring opening as the rate determining step.     

EPR study on the charge-transfer photochemistry of the bromide mixed-ligand dithiocarbamate complex of copper(II)

The EPR technique has been used to study the photolysis of the mixed-ligand complex Cu^II(Et₂dtc)Br in a 1:1 solvent mixture of chloroalkane and alcohol, where the chloroalkane is CCl₄, CHCl₃ or CH₂Cl₂ and the alcohol is MeOH, EtOH, i-PrOH or i-BuOH, in comparison with Cu^II(Et₂dtc)Cl photolysis in CHBr₃:ROH. It was found that while Cu^II(Et₂dtc)Br photolysis in chloroalkane:ROH yielded Cu^II(Et₂dtc)Cl as an intermediate, the opposite conversion of Cu^II(Et₂dtc)Cl to Cu^II(Et₂dtc)Br proceeded via Cu^II(Et₂dtc)Cl photolysis in CHBr₃:ROH. The final photolytic products in both cases were tetraethylthiuramdisulphide and the corresponding copper(II) salt (CuCl₂ or CuBr₂, respectively). The results obtained by EPR allowed to get some insight into the behaviour of the primary photolytic products towards both components of the mixed solvent.     

Silver release from nanocomposite Ag/alginate hydrogels in the presence of chloride ions: experimental results and mathematical modeling

A stepwise experimental and mathematical modeling approach was used to assess silver release from nanocomposite Ag/alginate microbeads in wet and dried forms into water and into normal saline solution chosen as a simplified model for certain biological fluids (e.g., blood plasma, wound exudates, sweat, etc). Three phenomena were connected and mathematically described: diffusion of silver nanoparticles (AgNPs) within the alginate hydrogel, AgNP oxidation/dissolution and reaction with chloride ions, and diffusion of the resultant silver-chloride species. Mathematical modeling results agreed well with the experimental data with the AgNP diffusion coefficient estimated as 1.3 × 10^?18 m² s^?1, while the first-order kinetic rate constant of AgNP oxidation/dissolution and diffusivity of silver-chloride species were shown to be inversely related. In specific, rapid rehydration and swelling of dry Ag/alginate microbeads induced fast AgNP oxidation/dissolution reaction with Cl^? and AgCl precipitation within the microbeads with the lowest diffusivity of silver-chloride species compared to wet microbeads in normal saline. The proposed mathematical model provided an insight into the phenomena related to silver release from nanocomposite Ca-alginate hydrogels relevant for use of antimicrobial devices and established, at the same time, a basis for further in-depth studies of AgNP interactions in hydrogels in the presence of chloride ions.