In Vitro Inhibitory Analysis of Rationally Designed siRNAs against MERS-CoV Replication in Huh7 Cells

MERS-CoV was identified for the first time in Jeddah, Saudi Arabia in 2012 in a hospitalized patient. This virus subsequently spread to 27 countries with a total of 939 deaths and 2586 confirmed cases and now has become a serious concern globally. Camels are well known for the transmission of the virus to the human population. In this report, we have discussed the prediction, designing, and evaluation of potential siRNA targeting the ORF1ab gene for the inhibition of MERS-CoV replication. The online software, siDirect 2.0 was used to predict and design the siRNAs, their secondary structure and their target accessibility. ORF1ab gene folding was performed by RNAxs and RNAfold software. A total of twenty-one siRNAs were selected from 462 siRNAs according to their scoring and specificity. siRNAs were evaluated in vitro for their cytotoxicity and antiviral efficacy in Huh7 cell line. No significant cytotoxicity was observed for all siRNAs in Huh7 cells. The in vitro study showed the inhibition of viral replication by three siRNAs. The data generated in this study provide preliminary and encouraging information to evaluate the siRNAs separately as well as in combination against MERS-CoV replication in other cell lines. The prediction of siRNAs using online software resulted in the filtration and selection of potential siRNAs with high accuracy and strength. This computational approach resulted in three effective siRNAs that can be taken further to in vivo animal studies and can be used to develop safe and effective antiviral therapies for other prevalent disease-causing viruses.     

Studies on thermal degradation of acrylonitrile–butadiene–styrene copolymer (ABS-Br) containing brominated flame retardant

The thermal degradation of acrylonitrile-butadiene-styrene copolymer (ABS-Br; 10 g) containing brominated flame retardant (Br: 9.59 wt.%) was carried out at 450 °C using a semi batch operation using two different temperature programs. The heating rate was found to affect the quality of the degradation oil and yield of products (liquid, gas and residue). Data on the effect of the temperature program on the accumulation of liquid products was presented. It was found that the majority of the bromine was concentrated in the carbon residue and while majority of the nitrogen accumulates in the liquid products irrespective of degradation mode. The use of a one step constant heating rate process (I) produced a higher liquid yield (39%), than a two step process (29%). Differences were also noted in the Br and N contained in the liquids produced by the two processes.     

Theoretical approach to the corrosion inhibition efficiency of some quinoxaline derivatives of steel in acid media using the DFT method

Corrosion inhibition efficiencies of 1,4-dihydroquinoxaline-2,3-dione (Q1) and 2-phenylthieno[2,3-b]quinoxaline (Q2) as corrosion inhibitors against the corrosion of steel surface in hydrochloric acid is studied by means of density functional approach B3LYP/6-31G calculations. Quantum chemical parameters such as highest occupied molecular orbital energy (E _HOMO), lowest unoccupied molecular orbital energy (E _LUMO), energy gap (ΔE), dipole moment (μ), electronegativity (χ), electron affinity (A), global hardness (η), softness (σ), ionization potential (I), the fraction of electrons transferred (?N), the global electrophilicity ω, and the total energy were calculated. All calculations have been performed by considering density functional theory using the GAUSSIAN03W suite of programs.     

Uniqueness of solution of production control problem in a manufacturing system with degenerate demand

This paper studies the production inventory problem of minimizing the expected discounted present value of production cost control in a manufacturing system with degenerate stochastic demand. We establish the existence of a unique solution of the Hamilton-Jacobi-Bellman (HJB) equation associated with this problem. The optimal control is given by a solution to the corresponding HJB equation.     

EFFECT OF VERTICAL BAFFLES ON PARTICLE MIXING AND DRYING IN FLUIDIZED BEDS OF GROUP D PARTICLES

This study reports the effect of vertical baffles on the group D powder mixing and drying characteristics in a batch fluidized bed dryer. Results obtained in this study showed that operating the fluidized bed dryer with vertical baffles gave better particle mixing. This is due to the fact that the vertical baffles acted to limit the growth of small bubbles into large bubbles and the small bubbles caused more vigorous mixing in the bed of particles before finally erupting at the bed surface. Thus, insertion of vertical baffles is a useful way to process group D particles in a fluidized bed, especially when the fluidized bed is large.     

Class number one problem for the real quadratic fields $${{\mathbb {Q}({\sqrt{m^2+2r}})}}$$ Q ( m 2 + 2 r )

Archiv der Mathematik - We investigate the class number one problem for a parametric family of real quadratic fields of the form $$\mathbb {Q}( \sqrt{m^2+4r})$$ for certain positive integers m and r.     

Olive-Derived Triterpenes Suppress SARS COV-2 Main Protease: A Promising Scaffold for Future Therapeutics

SARS CoV-2 pandemic is still considered a global health disaster, and newly emerged variants keep growing. A number of promising vaccines have been recently developed as a protective measure; however, cost-effective treatments are also of great importance to support this critical situation. Previously, betulinic acid has shown promising antiviral activity against SARS CoV via targeting its main protease. Herein, we investigated the inhibitory potential of this compound together with three other triterpene congeners (i.e., ursolic acid, maslinic acid, and betulin) derived from olive leaves against the viral main protease (M^pro) of the currently widespread SARS CoV-2. Interestingly, betulinic, ursolic, and maslinic acids showed significant inhibitory activity (IC₅₀ = 3.22–14.55 µM), while betulin was far less active (IC₅₀ = 89.67 µM). A comprehensive in-silico analysis (i.e., ensemble docking, molecular dynamic simulation, and binding-free energy calculation) was then performed to describe the binding mode of these compounds with the enzyme catalytic active site and determine the main essential structural features required for their inhibitory activity. Results presented in this communication indicated that this class of compounds could be considered as a promising lead scaffold for developing cost-effective anti-SARS CoV-2 therapeutics.     

Negative ion FAB mass spectroscopy of some ribose alkylated 5'-UMP derivatives

Characteristic fragment ions obtained in Fast atom bombardment (FAB) mass spectroscopy of ribose alkylated Uridine 5'-monophosphate (5'-UMP) derivatives in negative ion mode are described. All the compounds examined exhibited either [M]- or quasimolecular ion [M - H]- the fragmentations can be used to characterize these nucleotides.     

Challenges associated with the synthesis of unusual o-carboxamido stilbenes by the Heck protocol: Intriguing substituent effects, their toxicological and chemopreventive implications

The syntheses of fourteen unusual o-carboxamido stilbenes by the Heck protocol revealed surprising complexity related to intriguing substituent effects with mechanistic implications. The unexpected cytotoxic and chemopreventive properties also seem to be substituent dependent. For example, although stilbene 15d (with a 4-methoxy substituent) showed cytotoxicity on HT29 colon cancer cells with an IC(50) of 4.9 μM, the 3,4-dimethoxy derivative (15c) is inactive. It is interesting to observe that the 3,5-dimethoxy derivative (15e) showed remarkable chemopreventive activity in WRL-68 fetal hepatocytes, surpassing the gold standard, resveratrol. The resveratrol concentration needed to be 5 times higher than that of 15e to produce comparable elevation of NQO1.     

Ionic studies of sodium alginate isolated from Sargassum terrarium (brown algea) karachi coast with 2,1-electrolyte

Physical and chemical analysis of the polysaccharide isolated from Sargassum Terarrium (brown algae) of Karachi coast showed characteristics of the sodium alginate. Optical rotations and sulphated ash content were found and FTIR spectra showed a sharp and strong absorption band at 1600 cm^?1 representing carboxylate ion which conforms high uronic acid content of the product. The viscosities of aqueous 0.1% sodium alginate solution were measured in the presence of copper II chloride (CuCl₂). The viscosities were found to be increased with the increase in the concentration of electrolyte. Viscosities were also found affected with temperature. ‘A’ and ‘B’ coefficients of Jones–Dole equation were evaluated. The increase in positive values of ‘B’ coefficient with the rise of temperature led to conclusion that given electrolyte in 0.1% aqueous sodium alginate solution behaves as structure maker. Thermodynamic parameters regarding to activated state like energy of activation E_η, change in free energy of activation ΔG_η and change of entropy of activation ΔS_η were also evaluated. Straight-line plots of log η versus 1/T observed with positive slopes show the effect of temperature on the viscosities of solutions. Energy of activation (E_η) was found to be decreased with the rise of temperature. Change in free energy of activation (ΔG_η) was also found to be increased with increase in concentrations of electrolyte and also with rise of temperature. The values of change in entropy of activation (ΔS_η) were also calculated. Negative values of ΔS_η were found to be increased with increase in concentration of electrolyte and also with rise of temperature.