Supercoiled plasmid DNA purification by integrating membrane technology with a monolithic chromatography

The present study describes the integration of membrane technology with monolithic chromatography to obtain plasmid DNA with high quality. Isolation and clarification of plasmid DNA lysate were first conducted by a microfiltration step, by using a hydrophilic nylon microfiltration membrane, avoiding the need of centrifugation. For the total elimination of the remaining impurities, a suitable purification step is required. Monolithic stationary phases have been successfully applied as an alternative to conventional supports. Thus, the sample recovered from the membrane process was applied into a nongrafted CarbonylDiImidazole disk. Throughout the global procedure, a reduced level of impurities such as proteins and RNA was obtained, and no genomic DNA was detectable in the plasmid DNA sample. The chromatographic process demonstrated an efficient performance on supercoiled plasmid DNA purity and recovery (100 and 84.44%, respectively). Thereby, combining the membrane technology to eliminate some impurities from lysate sample with an efficient chromatographic strategy to purify the supercoiled plasmid DNA arises as a powerful approach for industrial‐scale systems aiming at plasmid DNA purification.     

In vitro antibacterial and time-kill assay of ethanolic extract of Davilla nitida bark on multidrug resistant bacteria isolated from diabetic foot lesions

This study reported the antimicrobial activity of the bark extract of Davilla nitida on multidrug resistant bacteria isolated from Diabetic Foot Infections. Antibacterial activity of the bark extract was evaluated by agar Disk-Diffusion (DD), Broth Dilution (BD), Checkerboard and Time-kill methods. The extract showed a significant antibacterial activity against all groups of bacteria tested. BD was more sensitive for determining the antibacterial activity of the bark extract than the DD method. The bark extract inhibited the growth of bacteria with high-levels of antibiotic-resistance, such as Pseudomonas spp. (100.0%), Enterobacer spp. (88.89%), Staphylococcus aureus (54.55%), Streptococcus pneumoniae (75.0%), Staphylococcus saprophyticus (92.86%). The combination of extract with antibiotics resulted in an additive effect against most of the strains tested. Time-kill kinetics profiles of bark extract showed bactericidal and time-dependent properties. Our results suggest that the bark extract of Davilla nitida is a source of bioactive compounds, which may be useful against antibiotic-resistant bacteria.     

Predicting hydration Gibbs energies of alkyl-aromatics using molecular simulation: a comparison of current force fields and the development of a new parameter set for accurate solvation data

The Gibbs energy of hydration is an important quantity to understand the molecular behavior in aqueous systems at constant temperature and pressure. In this work we review the performance of some popular force fields, namely TraPPE, OPLS-AA and Gromos, in reproducing the experimental Gibbs energies of hydration of several alkyl-aromatic compounds--benzene, mono-, di- and tri-substituted alkylbenzenes--using molecular simulation techniques. In the second part of the paper, we report a new model that is able to improve such hydration energy predictions, based on Lennard Jones parameters from the recent TraPPE-EH force field and atomic partial charges obtained from natural population analysis of density functional theory calculations. We apply a scaling factor determined by fitting the experimental hydration energy of only two solutes, and then present a simple rule to generate atomic partial charges for different substituted alkyl-aromatics. This rule has the added advantages of eliminating the unnecessary assumption of fixed charge on every substituted carbon atom and providing a simple guideline for extrapolating the charge assignment to any multi-substituted alkyl-aromatic molecule. The point charges derived here yield excellent predictions of experimental Gibbs energies of hydration, with an overall absolute average deviation of less than 0.6 kJ mol(-1). This new parameter set can also give good predictive performance for other thermodynamic properties and liquid structural information.     

Effect of Diets,Familial History,and Alternative Therapies on Genomic Instability of Breast Cancer Patients

This study evaluates a correlation between family history, micronutrients intake, and alternative therapies with genetic instability, before and during breast cancer treatment. For this study, a total of 150 women were selected. Among those, 50 women were breast cancer patients on chemotherapy, while 50 breast cancer patients were on radiotherapy, and 50 were healthy females. All the participants signed the informed consent form and answered the public health questionnaire. Samples of buccal epithelial and peripheral blood cells were collected and analyzed through micronucleus and comet assays. The cells were evaluated for apoptosis and DNA damage. Results showed the association of patients’ family history with an increase in toxicogenetic damage before and during cancer therapy. On the other hand, patients with late-onset cancer also presented genetic instability before and during therapy, along with those who did not take sufficient vegetables and alternative therapies. A positive correlation was observed between the genetic instability and alternative therapies, while inverse correlation was recorded with the vegetable consumption. Results clearly explain that the nutritional aspects and alternative therapies influence the genetic instability before and during cancer therapies especially in radiotherapy treated patients. Our data could be used for the monitoring therapies and management of breast cancer patients.

     

In situ Detection of Cobaloxime Intermediates During Photocatalysis Using Hollow-Core Photonic Crystal Fiber Microreactors

Hollow-core photonic crystal fibers (HC-PCFs) provide a novel approach for in situ UV/Vis spectroscopy with enhanced detection sensitivity. Here, we demonstrate that longer optical path lengths than afforded by conventional cuvette-based UV/Vis spectroscopy can be used to detect and identify the Co^I and Co^II states in hydrogen-evolving cobaloxime catalysts, with spectral identification aided by comparison with DFT-simulated spectra. Our findings show that there are two types of signals observed for these molecular catalysts; a transient signal and a steady-state signal, with the former being assigned to the Co^I state and the latter being assigned to the Co^II state. These observations lend support to a unimolecular pathway, rather than a bimolecular pathway, for hydrogen evolution. This study highlights the utility of fiber-based microreactors for understanding these and a much wider range of homogeneous photocatalytic systems in the future.     

Carbon Dioxide Capture and Release by Anions with Solvent‐Dependent Behaviour: A Theoretical Study

Recently, Clyburne and co‐workers [Science, 2014 , 344, 75–78] reported the novel synthesis of the elusive cyanoformate anion, NCCO₂^?. The stability of this anion is dependent on the dielectric constant of the local environment (polarity‐switchable solvent): it is stable in low‐polarity media and unstable in high‐polarity solvents; hence, capturing and then releasing CO₂. The possibility of extending such behaviour to other anions is explored herein. Specifically, the CO₂ capture process is studied for 26 anions in the gas phase and 3 distinct solvents (water, tetrahydrofuran, and toluene) by using the polarisable continuum model. Calculations are performed with the M06‐2X and B3LYP‐D3 density functionals and the aug‐cc‐pVTZ basis set. The design of new CO₂ complexes with the anion, which can be formed or destroyed on demand by changing the solvent, is possible; the results for the alkoxylate and thiolate anions are especially promising. The nature of the substituents connected to the atom that bonds to CO₂ in the anion is crucial in modulating the relative stability of the products—a key point for reversibility in the CO₂ capture process. A moderate interaction for the anion–CO₂ adduct—about 10 kcal mol^?1 relative free energy with respect to the isolated reactants in the gas phase—and a relevant effect in the dielectric constant of the local environment are also key ingredients to achieve solvent dependency.     

C-H...O hydrogen bonding in 4-phenyl-benzaldehyde: a comprehensive crystallographic, spectroscopic and computational study

The crystal structure of 4-phenyl-benzaldehyde reveals the presence of a dimer linked by the C=O and C9-H groups of adjacent molecules. In the liquid phase, the presence of C-H...O bonded forms is revealed by both vibrational and NMR spectroscopy. A DeltaH value of -8.2 +/- 0.5 kJ mol(-1) for the dimerisation equilibrium is established from the temperature-dependent intensities of the bands assigned to the carbonyl-stretching modes. The NMR data suggest the preferential engagement of the C(2,6)-H and C(10/12)/C(11)-H groups as hydrogen bond donors, instead of the C(9)-H group. While ab initio calculations for the isolated dimers are unable to corroborate these NMR results, the radial distribution functions obtained from molecular dynamics simulations show a preference for C(2,6)-H and C(10/12)/C(11)-H...O contacts relative to the C(9)-H...O ones.     

Thermodynamics of self-assembling of hydrophobically modified cationic polysaccharides and their mixtures with oppositely charged surfactants in aqueous solution

Microcalorimetric techniques, combined with turbidity measurements, were used to study the thermodynamics of self-assembling of hydrophobically modified cationic polysaccharides and their mixtures with oppositely charged surfactants in aqueous solution. The studied polyelectrolytes were a series of polymers based on dextran having pendant N-(2-hydroxypropyl)-N,N-dimethyl-N-alkylammonium chloride groups randomly distributed along the polymer backbone. The parameters for their micellization process are evaluated from the results of the observed dilution enthalpy curves and compared with those of the related cationic surfactants (DTAC and CTAC). The microcalorimetric results for the mixed systems (polyelectrolytes with oppositely charged surfactants) are used along with turbidity measurements to characterize systematically the thermodynamics of their interaction. The phase behavior is described and the interaction enthalpies are derived from the differences between the observed enthalpy curves with and without polyelectrolyte. Therefore, we discuss in detail the effect of changing the alkyl chain length of polyelectrolyte pendant groups, the molecular weight of the dextran backbone, and the temperature of the measurements on the interactions between polyelectrolyte and surfactant.     

Detailed 1H and 13C NMR structural assignment of ent-polyalthic acid,a biologically active labdane diterpene

In this paper, a complete ¹H and ¹³C NMR data assignment of ent-polyalthic acid, a biologically active labdane-type diterpene, is presented. The assignments were carried on the basis of spectroscopic data from ¹H NMR, ¹³C{¹H} NMR, gCOSY, gHMQC, and gHMBC experiments. Furthermore, a software-assisted methodology, using FOMSC3_rm_NB and NMR_MultSim programs, supported the detailed and unequivocal assignment of ¹H and ¹³C signals, allowing all hydrogen coupling constants to be determined and thus clarifying all hydrogen signal multiplicities.     

Transient Nearest Neighbor Random Walk and Bessel Process

We prove a strong invariance principle between a transient Bessel process and a certain nearest neighbor (NN) random walk that is constructed from the former by using stopping times. We show that their local times are close enough to share the same strong limit theorems. It is also shown that if the difference between the distributions of two NN random walks are small, then the walks themselves can be constructed in such a way that they are close enough. Finally, some consequences concerning strong limit theorems are discussed.