Iron(III) amine-bis(phenolate) complexes as catalysts for the coupling of alkyl halides with aryl Grignard reagents

Catalytic cross-coupling of aryl Grignard reagents with primary and secondary alkyl halides bearing beta-hydrogens is achieved using Fe(III) amine-bis(phenolate) halide complexes.     

Folding kinetics of a naturally occurring helical peptide: implication of the folding speed limit of helical proteins

The folding mechanism and dynamics of a helical protein may strongly depend on how quickly its constituent alpha-helices can fold independently. Thus, our understanding of the protein folding problem may be greatly enhanced by a systematic survey of the folding rates of individual alpha-helical segments derived from their parent proteins. As a first step, we have studied the relaxation kinetics of the central helix (L9:41-74) of the ribosomal protein L9 from the bacterium Bacillus stearothermophilus , in response to a temperature-jump ( T-jump) using infrared spectroscopy. L9:41-74 has been shown to exhibit unusually high helicity in aqueous solution due to a series of side chain-side chain interactions, most of which are electrostatic in nature, while still remaining monomeric over a wide concentration range. Thus, this peptide represents an excellent model system not only for examining how the folding rate of naturally occurring helices differs from that of the widely studied alanine-based peptides, but also for estimating the folding speed limit of (small) helical proteins. Our results show that the T-jump induced relaxation rate of L9:41-74 is significantly slower than that of alanine-based peptides. For example, at 11 degrees C its relaxation time constant is about 2 micros, roughly seven times slower than that of SPE(5), an alanine-rich peptide of similar chain length. In addition, our results show that the folding rate of a truncated version of L9:41-74 is even slower. Taken together, these results suggest that individual alpha-helical segments in proteins may fold on a time scale that is significantly slower than the folding time of alanine-based peptides. Furthermore, we argue that the relaxation rate of L9:41-74 measured between 8 and 45 degrees C provides a realistic estimate of the ultimate folding rate of (small) helical proteins over this temperature range.     

Efficient Algorithms for Variants of Weighted Matching and Assignment Problems

Obtaining a matching in a graph satisfying a certain objective is an important class of graph problems. Matching algorithms have received attention for several decades. However, while there are efficient algorithms to obtain a maximum weight matching, not much is known about the maximum weight maximum cardinality, and maximum cardinality maximum weight matching problems for general graphs. Our contribution in this work is to show that for bounded weight input graphs one can obtain an algorithm for both maximum weight maximum cardinality (for real weights), and maximum cardinality maximum weight matching (for integer weights) by modifying the input and running the existing maximum weight matching algorithm. Also, given the current state of the art in maximum weight matching algorithms, we show that, for bounded weight input graphs, both maximum weight maximum cardinality, and maximum cardinality maximum weight matching have algorithms of similar complexities to that of maximum weight matching. Subsequently, we also obtain approximation algorithms for maximum weight maximum cardinality, and maximum cardinality maximum weight matching.      

Micellar effect on quinquivalent vanadium ion oxidation of D‐glucose in aqueous acid media: A kinetic study

Vanadium(V) oxidation of D ‐glucose shows first‐order dependence on D ‐glucose, vanadium(V), H⁺, and HSO. These observations remain unaltered in the presence of externally added surfactants. The effect of the cationic surfactant (i.e., N‐cetylpyridinium chloride [CPC]), anionic surfactant (i.e., sodium dodecyl sulfate [SDS]), and neutral surfactant (i.e., Trion X‐100 [TX‐100]) has been studied. CPC inhibits the reactions, whereas SDS and TX‐100 accelerate the reaction to different extents. Observed effects have been explained by considering the hydrophobic and electrostatic interaction between the surfactants and reactants. © 2008 Wiley Periodicals, Inc. Int J Chem Kinet 40: 282–286, 2008     

A copper(II) complex of benzimidazole-based ligand: synthesis,structure, redox aspects and fluorescence properties

Employing 1-(2-methoxybenzyl)-2-(2-methoxyphenyl)-1H-benzimidazole (bpb) as a monodentate ligand, a new greenish-blue copper(II) complex, [Cu(bpb)₂(NO₃)₂] (1a), has been synthesized. 1a has been characterized analytically and spectroscopically. The X-ray crystal structure of 1a reveals that it adopts a cis disposition with respect to the ligands. The solid state structure of 1a is stabilized by intramolecular offset face-to-face π–π stacking. Non-covalent supramolecular edge-to-face C–H?π interactions with neighboring molecules give 1-D supramolecular chains that further lead to the formation of an assembled 3-D supramolecular metal-organic framework via hydrogen bonding interactions. 1a shows blue fluorescence most likely due to intramolecular offset face-to-face π–π stacking. At room temperature, 1a is one-electron paramagnetic. It shows a rhombic EPR spectrum with g₁ = 2.12, g₂ = 2.42, and g₃ = 2.52 in the solid state at liquid nitrogen temperature. In cyclic voltammetry, 1a displays a one-electron oxidative Cu(II)/Cu(III) couple. Our DFT calculations, corroborate the observed experimental results of 1a.     

Iron Oxide Supported on Al2O3 Catalyst for Methane Decomposition Reaction: Effect of MgO Additive and Calcination Temperature

Production of hydrogen is a challenging task and have significant impact in the recent scenario. The alumina supported iron oxide nanoparticle synthesized using non‐ionic surfactant Triton‐X was found very effective for steady production of hydrogen through methane decomposition reaction. The high surface area, easily reducible catalyst calcined at 500 °C and 800 °C temperature showed steady activity towards methane decomposition reaction. At a higher reaction temperature there was catalyst deactivation. The doping of MgO facilitated particle growth rendering the poor catalytic activity. The TPR study showed that reducibility of TPR was difficult in presence of MgO additive. The formation of Fe? Mg? Al solid solution confirmed by XRD study was found mainly responsible for the lower catalytic activity. The bamboo‐shaped carbon nanotube formed from 20 % Fe/Al₂O₃ catalyst which is mainly because of the poor wetting property of quasi‐liquid metal and carbon nanotube.     

First-principles characterisation of the pressure-dependent elastic anisotropy of SnO2 polymorphs

Using DFT calculations, this study investigates the pressure-dependent variations of elastic anisotropy in the following SnO₂ phases: rutile-type (tetragonal; P4₂/mnm), CaCl₂-type (orthorhombic; Pnnm)-, α-PbO₂-type (orthorhombic; Pbcn)- and fluorite-type (cubic; Fm-3m). Experimentally, these polymorphs undergo sequential structural transitions from rutile-type → CaCl₂-type → α-PbO₂-type → fluorite-type with increasing pressure at 11.35, 14.69 and 58.22 GPa, respectively. We estimate the shear anisotropy (A₁ and A₃) on {1?0?0} and {0?0?1} crystallographic planes of the tetragonal phase and (A₁, A₂ and A₃) on {1?0?0}, {0?1?0} and {0?0?1} crystallographic planes of the orthorhombic phases. The rutile-type phase shows strongest shear anisotropy on the {0?0?1} planes (A₂ > 4.8), and the degree of anisotropy increases nonlinearly with pressure. In contrast, the anisotropy is almost absent on the {1?0?0} planes (ie A₁ ~ 1) irrespective of the pressure. The CaCl₂-type phase exhibits similar shear anisotropy behaviour preferentially on {0?0?1} (A₃ > 5), while A₁ and A₂ remain close to 1. The α-PbO₂-type phase shows strikingly different elastic anisotropy characterised by a reversal in anisotropy (A₃ > 1 to < 1) with increasing pressure at a threshold value of 38 GPa. We provide electronic density of states and atomic configuration to account for this pressure-dependent reversal in shear anisotropy. Our study also analyses the directional Young’s moduli for the tetragonal and orthorhombic phases as a function of pressure. Finally, we estimate the band gaps of these four SnO₂ phases as a function of pressure which are in agreement with the previous results.     

Syntheses,X-ray structures and properties of a dinuclear cadmium(II)azido and a polymeric cadmium(II)thiocyanato compounds containing bis(tridentate) congregators

One-pot reactions of cadmium(II) perchlorate/nitrate, Schiff bases (pbap/pfap) and pseudohalides (sodium azide/ammonium thiocyanate) in a 2:1:4 molar ratio in MeOH–MeCN solvent mixtures at room temperature result in a dinuclear compound [Cd₂(pbap)(OH₂)₂(N₃)₄] (1) [pbap = N-(1-pyridin-2-ylbenzylidene)-N-[2-(4-{2-[(1-pyridin-2-ylbenzylidene)amino]ethyl}piperazin-1-yl)ethyl]amine] and a polymeric compound [Cd₂(pfap)(μ_1,3-NCS)(μ_1,3-SCN)(NCS)₂]_n (2) [pfap = N-(1-pyridin-2-ylformylidene)-N-[2-(4-{2-[(1-pyridin-2ylformylidene)amino]ethyl}piperazin-1-yl)ethyl]-amine]. X-ray crystal structural analyses reveal a bis(tridentate) congregation behaviour of the hexadentate blocker (pbap/pfap) encapsulating two metal centers. Each cadmium(II) center in 1 and 2 is in a distorted octahedral geometry with CdN₅O and CdN₅S chromophores, respectively. In 1, the dinuclear units participate in intermolecular O–H?N hydrogen bonding between bound water O atoms and terminal azide N atoms, in combination with C–H?π interactions, resulting in a 3D supramolecular network with an intramolecular Cd?Cd distance of 6.473(2) Å. In the crystal lattice, the covalent 1D chain of 2 is further engaged in face-to-face π?π interactions from two terminal pyridine rings, which stabilizes the chain with an intradimer Cd?Cd separation of 6.640(5) Å. Both the complexes display intraligand ¹(π–π^∗) fluorescence and intraligand ³(π–π^∗) phosphorescence in glassy solutions.     

Response normalized liquid chromatography nanospray ionization mass spectrometry

The widely different LC-MS response observed for many structurally different compounds limits the use of LC-MS in full scan detection mode for quantitative determination of drugs and metabolites without using reference standard. The recently introduced nanospray ionization (NSI) technique shows comparable MS response for some compounds under non-LC-MS conditions. However, in the presence of numerous endogenous compounds commonly associated with biological samples such as urine, plasma, and bile, LC-MS is required to separate, detect, identify, and measure individual analytes. An LC-NSI-MS system was devised and the MS response obtained in this system for a variety of pharmaceutical drugs and their metabolites. The set-up involves two high-performance liquid chromatography (HPLC) systems, a chip-based NSI source and a quadrupole-time-of-flight (Q-TOF) mass spectrometer. Herein this is referred to as the response normalized-liquid chromatography NSI-MS (RNLC-NSI-MS) system. One HPLC unit performs the analytical separation, while the other unit adds solvent post-column with an exact reverse of the mobile phase composition such that the final composition entering the NSI source is isocratic throughout the entire HPLC run. The data obtained from four different structural classes of compounds [vicriviroc (VCV), desloratadine (DL), tolbutamide, and cocaine] and their metabolites indicate that by maintaining the solvent composition unchanged across the HPLC run, the influence of the solvent environment on the ionization efficiency is minimized. In comparison to responses obtained from radiochromatograms, responses from conventional LC-ESI-MS overestimated the VCV and DL responses, respectively, by 6- and 20-fold. Although VCV and DL responses obtained using LC-NSI-MS are within 2- to 6-fold from the respective radiochromatographic responses, the response normalization modification results in nearly uniform LC-NSI-MS response for all compounds evaluated.     

Evaluation of low energy CID and ECD fragmentation behavior of mono-oxidized thio-ether bonds in peptides

Thio-ether bonds in the cysteinyl side chain of peptides, formed with the most commonly used cysteine blocking reagent iodoacetamide, after conversion to sulfoxide, releases a neutral fragment mass in a low-energy MS/MS experiment in the gas phase of the mass spectrometer [6]. In this study, we show that the neutral loss fragments produced from the mono-oxidized thio-ether bonds (sulfoxide) in peptides, formed by alkyl halide or double-bond containing cysteine blocking reagents are different under low-energy MS/MS conditions. We have evaluated the low-energy fragmentation patterns of mono-oxidized modified peptides with different cysteine blocking reagents, such as iodoacetamide, 3-maleimidopropionic acid, and 4-vinylpyridine using FTICR-MS. We propose that the mechanisms of gas-phase fragmentation of mono-oxidized thio-ether bonds in the side chain of peptides, formed by iodoacetamide and double-bond containing cysteine blocking reagents, maleimide and vinylpyridine, are different because of the availability of acidic beta-hydrogens in these compounds. Moreover, we investigated the fragmentation characteristics of mono-oxidized thio-ether bonds within the peptide sequence to develop novel mass-spectrometry identifiable chemical cross-linkers. This methionine type of oxidized thio-ether bond within the peptide sequence did not show anticipated low-energy fragmentation. Electron capture dissociation (ECD) of the side chain thio-ether bond containing oxidized peptides was also studied. ECD spectra of the oxidized peptides showed a greater extent of peptide backbone cleavage, compared with CID spectra. This fragmentation information is critical to researchers for accurate data analysis of this undesired modification in proteomics research, as well as other methods that may utilize sulfoxide derivatives.