Extrinsic fluorescence probe study of human serum albumin using Nile red

Nile red bound to human serum albumin (HSA) shows an order of magnitude increase in the probe's fluorescence intensity. Here, we report on the fluorescence characteristics of the probe-protein complex in Trizma buffer (pH 7.1), urea, guanidine hydrochloride, and AOT/isooctane/buffer reverse micelles using both steady—state and time-resolved fluorescence techniques. With a view to illustrating the use of extrinsic probe fluorescence spectroscopy in protein research, we demonstrate that protein unfolding can be observed through measurements of the probe's time-resolved anisotropy and steady-state fluorescence spectrum. Moreover, this shows that thermal unfolding is fundamentally different from using denaturant, with respect to changes in both the nanosecond diffusional rotation of the probe at intermediate stages and in the denatured protein's structure. Also, the large Stokes shift of Nile red allows the changes in the environment of the probe-protein complex in reverse micelles of varying waterpool size to be easily identified in the steady-state fluorescence. This was not seen in earlier work exploiting the intrinsic tryptophan fluorescence of HSA and further demonstrates the complementary information that extrinsic fluorescence probe studies can offer protein science. We discuss the complex acrylamide quenching characteristics of Nile red bound to HSA in terms of the possibility of at least two binding sites for the probe and the effect of acrylamide on the probe-protein structure at very high quencher concentrations.     

The origin of fluorescence from trans-trans diphenylbutadiene

Fluorescence decay time and yield of trans-trans diphenylbutadiene in methylcyclohexane/isohexane and propylene glycol were measured between ?50 and +50°C. The radiative rate parameter is independent of solvent and temperature, with a mean value of 8.2 × 10⁸ s^?1. This is similar to trans-stilbene but unlike longer polyenes, and is consistent with emission from ¹B^*_u rather than the low-lying ¹Ag^*_g state.     

High-resolution spectroscopy of SO2 using a frequency-doubled,continuous-wave dye laser

The SO₂ molecule is of considerable interest in the context of atmospheric pollution, and in many laser monitoring techniques the ultraviolet absorption band at 300 nm is used to determine SO₂ concentrations in the atmosphere. Recent laboratory experiments with a resolution of 2 × 10^-3 nm showed that variations could occur in absorption cross-section measurements made with different laser bandwidths due to unresolved fine structure. We have investigated absorption spectra with a line width of 3 × 10^-6 nm, using a frequency-doubled continuous-wave dye laser, and have confirmed the existence of fine structure in the absorption even when collisionally broadened with an atmosphere of nitrogen. These measurements provide a data base from which valid absorption cross sections may be calculated for all monitoring laser bandwidths. We estimate the pressure broadening coefficient for nitrogen in this wavelength region as 83 ± 38 kHz Pa^-1 (11 ± 5 MHz torr^-1). The temperature dependence of the absorption cross-section was also investigated.     

Stable isotope analysis of white-tailed deer teeth as a paleoenvironmental proxy at the Maya site of La Joyanca,northwestern Petén,Guatemala*

ABSTRACT

Carbon and oxygen isotopes ratios from herbivore teeth have previously been used as paleo-environmental proxies in temperate zones. However, their utility in tropical zones remains uncertain. In this study, sequential sub-samples from white-tailed deer (Odocoileus virginianus) teeth (second and third molars) from the Maya archaeological site of La Joyanca, located in northwestern Petén, Guatemala, show that δ¹⁸O of enamel carbonate corresponds broadly to modern observed precipitation δ¹⁸O over the 10-month period of tooth formation, capturing rainfall seasonality. The analyses also detect significant diachronic differences in the δ¹⁸O between the periods 1100–1000 BP (850–950 A.D.) and 1000–900 BP (950–1050 A.D.) at La Joyanca. The δ¹³C in both periods are indicative of a C₃-plant based diet, which suggests cultivation of maize did not differentially affect deer diet during this period.     

Cu2+ Effects on Beta-Amyloid Oligomerisation Monitored by the Fluorescence of Intrinsic Tyrosine

A non-invasive intrinsic fluorescence sensing of the early stages of Alzheimer's beta amyloid peptide aggregation in the presence of copper ions is reported. By using time-resolved fluorescence techniques the formation of beta amyloid-copper complexes and the accelerated peptide aggregation are demonstrated. The shifts in the emission spectral peaks indicate that the peptides exhibit different aggregation pathways than in the absence of copper.     

Effect of available volumes on radial distribution functions

The traditional method of analyzing solution structuring properties of solutes using atom–atom radial distribution functions (rdfs) can give rise to misleading interpretations when the volume occupied by the solute is ignored. It is shown by using the examples of O(4) in α- and β-D-allose that a more reliable interpretation of rdfs can be obtained by normalising the rdf using the available volume, rather than the traditional volume of a spherical shell. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 363–367, 1998     

Carotid atherosclerotic plaque characterisation by measurement of ultrasound sound speed in vitro at high frequency, 20 MHz

This study aimed to utilise a tissue mimicking material (TMM) in order to embed in vitro carotid plaque tissue so that its acoustic properties could be assessed. Here, an International Electrotechnical Commission (IEC) agar-based TMM was adapted to a clear gel by removal of the particulates. This clear TMM was measured with sound speed at 1540 ms⁻¹ and an attenuation coefficient of 0.15 dB cm⁻¹ MHz⁻¹. Composite sound speed was then measured through the embedded material using a scanning acoustic microscope (SAM). Both broadband reflection and transmission techniques were performed on each plaque specimen in order to ensure the consistency of the measurement of sound speed, both at 21 °C and 37 °C. The plaque was measured at two temperatures to investigate any effect on the lipid content of the plaque. The contour maps from its associated attenuation plots were used to match the speed data to the photographic mask of the plaque outline. This physical matching was then used to derive the sound speed from the percentage composition seen in the histological data by solution of simultaneous equations. Individual speed values for five plaque components were derived; TMM, elastin, fibrous/collagen, calcification and lipid. The results for derived sound speed in the TMM were consistently close to the expected value of soft tissue, 1540 ms⁻¹. The fibrous tissue showed a mean value of 1584 ms⁻¹ at 37 °C. The derived sound speeds for elastic and lipid exhibited large inter-quartile ranges. The calcification had higher sound speed than the other plaque components at 1760–2000 ms⁻¹. The limitations here lay in the difficulties in the matching process caused by the inhomogeneity of the plaque material and shrinkage during the histological process. Future work may concentrate on more homogeneous material in order to derive sound speed data for separate components. Nevertheless, this study increases the known data ranges of the individual components within a plaque. This information may be used help to assess the mechanical properties and structural integrity and its associated vulnerability or risk of embolization in future diagnostic ultrasound techniques.