The Theoretical and Experimental Studies on Oxidation of Straight Chain Amino Acids in Moderately Concentrated Sulfuric Acid Medium

The kinetics of the permanganic oxidation process of some straight chain amino acids in moderately concentrated sulfuric acid medium have been investigated using a spectrophotometric technique. Conclusive evidences have proven autocatalytic activity of Mn(II) for these reactions. It is determined that even and odd effects of the number carbon atom in a carbon chain are annihilated when it's the number of carbon atoms is increased more than of three in a noncatalytic oxidation pathway. Thus, rate constants belonging to glycine, l ‐α‐amino‐n‐butyric acid, l ‐norleucine, and l ‐α‐amino‐n‐heptanoic acid satisfy Taft's equation involving the induction factor in the noncatalytic pathway, whereas l ‐α‐amino‐n‐heptanoic acid has an odd number of carbon atom in its chain carbon. On the other hand, in the catalytic pathway, rate constants satisfy Taft' equation including inductive and steric factors, when rate constants belonging to amino acids with an even number of carbon atoms are separated from those with an odd number of carbon atoms. The oxidation process of amino acids in the noncatalytic pathway and those with the even number of carbon atoms in the carbon chain in the catalytic pathway speeds up by an increase in the length of chain that is accompanied with an increase in the carbon chain's electron‐donating characteristic. On the other hand, an increase in the length of the carbon chain is accompanied with more steric hindrance, which counteracts its electron‐donating character, thereby decreasing reaction rate in the catalytic pathway. Finally, amino acid–Mn(II) complexes were studied using a density functional theory method. Results obtained show that such a complex is less stable than reactants, namely it is formed in an endothermic reaction. The number and strength of hydrogen bonding belonging to amino acid is more than those of the amino acid–Mn(II) complex. Besides, it has been illustrated that natural bond orbital analysis and molecular orbital calculations satisfy the findings.     

DFT Study of the Mechanism and Regioselectivity of 1,3-Pentadiene with Methyl Acrylate Using Theoretical Approaches

<正>Ab initio density functional theory (DFT) calculations have been used to study regioselectivity in the Diels-Alder (DA) cycloaddition reaction between 1,3-pentadiene and methyl acrylate. The DFT calculations were performed with the B3LYP functional and 6-311+G~(**) basis set. Two synchronous transition structures corresponding to the formation of different regioisomers associated with the two reaction channels have been located. The DFT calculations generated transition geometries with a very small degree of asynchronicity. The present analysis shows that these reactions have normal electron demand (NED) character. Moreover, the results obtained from energetic and electronic approaches with the exception of Houk's rule confirm that ortho regioisomer is the major product.     

Emulsification based dispersive liquid microextraction prior to flame atomic absorption spectrometry for the sensitive determination of Cd(II) in water samples

We report on the application of emulsification-based dispersive liquid microextraction (EB-DLME) to the preconcentration of Cd(II). This procedure not only possesses all the advantages of routine DLLME, but also results in a more stable cloudy state which is particularly useful when coupling it to FAAS. In EB-DLME, appropriate amounts of the extraction solvent (a solution of dithizone in chloroform) and an aqueous solution of sodium dodecyl sulfate (SDS; acting as a disperser) are injected into the samples. A stable cloudy microemulsion is formed and Cd(II) ion is extracted by chelation. After phase separation, the sedimented phase is subjected to FAAS. Under optimized conditions, the calibration curve for Cd(II) is linear in the range from 0.1 to 25 μg L^?1, the limit of detection (at S/N?=?3) is 30 pg L^?1, the relative standard deviations for seven replicate analyses (at 0.56 μg L^?1 of Cd(II)) is 4.6 %, and the enrichment factor is 151. EB-DLME in our opinion is a simple, efficient and rapid method for the preconcentration of Cd(II) (and most likely of many other ions) prior to FAAS determination.

First Highly Efficient Synthesis of bis(Arylmethylidene)pyranones Mediated by Lithium Perchlorate

A remarkably efficient double‐crossed aldol condensation of tetrahydropyran‐4‐one with a variety of aromatic aldehydes is described at room temperature in the presence of (trimethylsilyl)diethylamine and lithium perchlorate under solvent‐free conditions. Excellent yields of 3,5‐bis(arylmethylidene)pyranones are achieved in a facile one‐pot general procedure.     

Quantum Monte Carlo study of ground and first excited state of C,N, O,F, and Ne atoms using Slater-Jastrow-Backflow wave function

All-electron fixed-node diffusion quantum Monte Carlo energies of the two lowest-lying states of C, N, O, F, and Ne atoms are reported. The Slater-Jastrow form is used as the trial wave function. We will use single- and multideterminant wave functions as the Slater part. The single-determinant wave function has been computed by the Hartree-Fock method and the multideterminant wave functions have been computed by the complete active space self-consistent field, configuration interaction with single and double excitation, configuration interaction with single, double, triple, and quadruple excitation and second-order configuration interaction. For the ground- and first excited states, the multideterminant wave functions have computed more than 99% of the correlation energy. Significant improvements have been achieved using the backflow transformations and up to 99.8% of the correlation energy has been recovered. A very good agreement with the experimental data has been obtained for the excitation energies.     

Interaction Modes and Absolute Affinities of α‐Amino Acids for Mn2+: A Comprehensive Picture

Manganese is involved as a cofactor in the activation of numerous enzymes as well as the oxygen‐evolving complex of photosystem II. Full understanding of the role played by the Mn²⁺ ion requires detailed knowledge of the interaction modes and energies of manganese with its various environments, a knowledge that is far from complete. To bring detailed insight into the local interactions of Mn in metallopeptides and proteins, theoretical studies employing first‐principles quantum mechanical calculations are carried out on [Mn‐amino acid]²⁺ complexes involving all 20 natural α‐amino acids (AAs). Detailed investigation of [Mn‐serine]²⁺_, [Mn‐cysteine]²⁺, [Mn‐phenylalanine]²⁺, [Mn‐tyrosine]²⁺, and [Mn‐tryptophan]²⁺ indicates that with an electron‐rich side chain, the most stable species involves interaction of Mn²⁺ with carbonyl oxygen, amino nitrogen, and an electron‐rich section of the side chain of the AA in its canonical form. This is in sharp contrast with aliphatic side chains for which a salt bridge is formed. For aromatic AAs, complexation to manganese leads to partial oxidation as well as aromaticity reduction. Despite multisite binding, AAs do not generate strong enough ligand fields to switch the metal to a low‐ or even intermediate‐spin ground state. The affinities of Mn²⁺ for all AAs are reported at the B3LYP and CCSD(T) levels of theory, thereby providing the first complete series of affinities for a divalent metal ion. The trends are compared with those of other cations for which affinities of all AAs have been previously obtained.     

Delta function approximations in level set methods by distance function extension

In [A.-K. Tornberg, B. Engquist, Numerical approximations of singular source terms in differential equations, J. Comput. Phys. 200 (2004) 462–488], it was shown for simple examples that the then most common way to regularize delta functions in connection to level set methods produces inconsistent approximations with errors that are not reduced with grid refinement. Since then, several clever approximations have been derived to overcome this problem. However, the great appeal of the old method was its simplicity. In this paper it is shown that the old method – a one-dimensional delta function approximation extended to higher dimensions by a distance function – can be made accurate with a different class of one-dimensional delta function approximations. The prize to pay is a wider support of the resulting delta function approximations.