Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates

Fluorescence detection and imaging are vital technologies in the life sciences and clinical diagnostics. The key to obtaining high-resolution images and sensitive detection is to use fluorescent molecules or particles that absorb and emit visible light with high efficiency. We have synthesized supramolecular complexes consisting of a branched DNA template and fluorogenic intercalating dyes. Because dyes can intercalate up to every other base pair, high densities of fluorophores are assembled yet the DNA template keeps them far enough away from each other to prevent self-quenching. The efficiency with which these noncovalent assemblies absorb light is more than 10-fold greater than that of the individual dye molecules. F?rster resonance energy transfer from the intercalated dyes to covalently attached acceptor dyes is very efficient, allowing for wavelength shifting of the emission spectrum. Simple biotinylation of the DNA template allows for labeling of streptavidin-coated synthetic microspheres and mouse T-cells.     

A Liouville-type Theorem for Schrödinger Operators

In this paper we prove a sufficient condition, in terms of the behavior of a ground state of a symmetric critical operator P ₁, such that a nonzero subsolution of a symmetric nonnegative operator P ₀ is a ground state. Particularly, if P _j : = ?Δ + V _j , for j = 0,1, are two nonnegative Schrödinger operators defined on \(\Omega\subseteq \mathbb{R}^d\) such that P ₁ is critical in Ω with a ground state φ, the function \(\psi\nleq 0\) is a subsolution of the equation P ₀ u = 0 in Ω and satisfies \(\psi_+\leq C\varphi\) in Ω, then P ₀ is critical in Ω and \(\psi\) is its ground state. In particular, \(\psi\) is (up to a multiplicative constant) the unique positive supersolution of the equation P ₀ u = 0 in Ω. Similar results hold for general symmetric operators, and also on Riemannian manifolds.     

Frequency upshift in BO2 and CO2+ upon electronic excitation: a twin-state model rationalization

The twin-state model, previously shown to provide a simple physical rationalization for the frequency upshift (exaltation) of the Kekulé mode in benzene upon S(0) to S(1) electronic excitation, is extended to the case of the BO(2) radical and the CO(2)(+) radical cation. In the case of BO(2)/CO(2)(+), the ground and excited states are degenerate, yet the model applies to the degenerate two-state system as well. In contrast with a pseudo-Jahn-Teller model, the twin-state one can predict which frequency is exalted and also which pair of electronic states are coupled, thus explaining the specificity of the phenomenon. The frequency exaltation is a spectroscopic manifestation of the resonance between the pair of VB structures describing twin states. In analogy with the case of benzene, it is predicted that the ν(3) asymmetric stretch fundamental will be a dominant peak in the two-photon absorption spectrum of BO(2) and CO(2)(+).     

On the efficiency of water soluble antioxidants

The wide use of high intensity ultrasound (HIU) in modern medicine raises the question of bio-safety. It has been shown that the effect of HIU in biological media may have similarity to the effects of ionizing radiation. Exposure of biological media to HIU field may lead to cavitation phenomenon followed by formation of free radicals such as hydroxyl radical (OH) and the super-oxide ion (O₂-). These are highly reactive species that may cause harmful effects and induce oxidative stress. In the present study we employed electron spin resonance (ESR) spectroscopy together with spin traps to quantify the dynamics of hydroxyl radical formation during exposure to HIU field in the presence of different amounts of six antioxidants. Thus, the efficiency of water-soluble antioxidants, namely Allicin, Melatonin, Deoxyribose, Trolox, Nuphlutine and Hermidin, to suppress accumulation of OH radicals was examined. The results show that among the six, Trolox and Allicin reduce hydroxyl concentration with the highest efficiency.     

On the mechanism of aromatic hydroxylation by O(3P) atoms

It is shown that O(³P) oxidation of aromatic compounds in the liquid phase leading to phenols may involve the intermediacy of triplet diradicals.     

Violatinctamine, a new heterocyclic compound from the marine tunicate Cystodytes cf. violatinctus

A new alkaloid designated violatinctamine and four known metabolites were isolated from the tunicate Cystodytes cf. violatinctus collected in Kenya. Violatinctamine has a unique heterocyclic skeleton, which combines a benzothiazole unit and a dihydroisoquinoline unit. The structure of violatinctamine was elucidated by interpretation of MS results as well as 1D and 2D NMR spectra of the alkaloid and of its O,O′-dimethyl derivative. Analysis of the spectral information also implies that violatinctamine exists as a mixture of two tautomers—the imino-phenol and the amino quinone-methide.     

Kitungolides A, B, and C, new diterpenes from a soft coral of a new genus

Three novel compounds, designated kitungolides A (1), B (2), and C (3), were isolated from a soft coral of a new genus collected at Kitungamwe, Kenya. The three new compounds are of a unique heterotricyclic skeleton. The structures and relative stereochemistry of the compounds were elucidated by interpretation of MS, COSY, HMQC, HMBC, and NOESY experiments. [structure: see text]     

A valence bond analysis of electronic degeneracies in Jahn-Teller systems: low-lying states of the cyclopentadienyl radical and cation

The lowest doublet electronic state of the cyclopentadienyl radical (CPDR) and the lowest singlet state of the cyclopentadienyl cation (CPDC) are distorted from the highly symmetric D(5h) structure due to the Jahn-Teller effect. A valence bond analysis based on the phase-change rule of Longuet-Higgins reveals that in both cases the distortion is due to the first-order Jahn-Teller effect. It is shown that, while for the radical an isolated Jahn-Teller degeneracy is expected, in the case of the cation the main Jahn-Teller degeneracy is accompanied by five satellite degeneracies. The method offers a chemically oriented way for identifying the distortive coordinates.     

Reactions in dry media: reactions of cholesterol and cholestanes on silica bound ferric chloride : Cholestane—diacholestene rearrangement

Reaction of cholesterol with silica bound FeCl₃ resulted in a mixture of 3β-cholesteryl chloride and dicholesteryl ether.5-Cholestene and hydroxy- and halogeno-substituted cholestane derivatives gave on heating at 100° with this reagent a 1:1 mixture of 20-epimeric diacholestenes. The 20(R)-isomer gave with meta-chloroperbenzoic acid 20(R)-α-epoxide, while the 20(S)-gave a mixture of 20(S)-α- and 20(S)-β-epoxides.5α,6β-Dihydrocholestane reacted with the FeCl₃/SiO₂ under milder conditions (50°) to give 6β-hydroxy-20(R)-diacholestene, which was converted to the 20(R)-diacholestene.     

Callynormine A, a new marine cyclic peptide of a novel class

[structure: see text] A novel cyclic peptide, callynormine A, was isolated from the Kenyan marine sponge Callyspongia abnormis and its structure elucidated by interpretation of its NMR data and X-ray diffraction analysis. Callynormine A represents a new class of heterodetic cyclic peptides (designated endiamino peptides) possessing an alpha-amido-beta-aminoacrylamide cyclization functionality.