Rapid qualitative evaluation of DNA transcription factor NF-κB by microchip electrophoretic mobility shift assay in mammalian cells

We have developed a separation technique for DNA-protein complex based on electrophoretic mobility shift assay (EMSA) by microchip electrophoresis, which we call microchip electrophoretic mobility shift assay (μEMSA). To evaluate the μEMSA, we employed recombinant human nuclear factor-κB (rhNF-κB) and its consensus double-stranded oligonucleotide (dsOligo) fluorescently labeled with Cy5. We carried out the electrophoretic separation of the consensus dsOligo-rhNF-κB complex and the unbound dsOligo in methylcellulose solution and confirmed rapid (～200 s) and reliable identification and semi-quantitation of the specific interaction between dsOligo and rhNF-κB. The binding specificity of rhNF-κB was confirmed by introducing non-fluorescently labeled consensus oligonucleotide as a competitor. The progression of the binding reaction under various incubation times was monitored, and it was found that the dsOligo and rhNF-κB complex formation reached equilibrium (ca. 90% of the dsOligo was bound to rhNF-κB) after 5 min. Furthermore, without any purification process, even crude NF-κB in nuclear extracts from HeLa cells was specifically detected within 120 s by the μEMSA.     

Differentiation between sulfoaildenafil and its analogs

An analog of aildenafil, which is a potent and highly selective inhibitor of phosphodiesterase 5, was found in a dietary supplement marketed for enhancement of sexual function. The compound was isolated by silica gel column chromatography, and its structure was identified by means of 13C-NMR spectrometry, 1H-NMR spectrometry, high-resolution MS, and X-ray structure determination. The compound was identified to be sulfoaildenafil (other names: thioaildenafil, dimethyl sildenafil thione, and thiomethisosildenafil). Sulfoaildenafil is very similar to the compound thiohomosildenafil. As it is difficult to distinguish between them by LC-photodiode array detector analysis, ultra-performance LC (UPLC)/MS, ion trap LC/MS/MS (LC/IT-MS/MS), and GC/MS were performed. The mass spectra of thiohomosildenafil by UPLC/MS and LC/IT-MS/MS showed mass fragments of m/z 58, 72, and 355, and the mass spectrum by GC/MS showed mass fragments of m/z 56, 72, and 420. Some of these fragments had low intensities, but they were useful for distinguishing between the two compounds. The relationship between aildenafil (other names: dimethylsildenafil and methisosildenafil) and homosildenafil is similar to that between sulfoaildenafil and thiohomosildenafil. Therefore, these compounds were also examined.     

Photoinduced isothermal phase transitions of liquid-crystalline macrocyclic azobenzenes

Liquid-crystalline macrocyclic compounds, tethered by two or three azobenzenes bearing alkoxy side chains, exhibit isothermal phase transitions from liquid-crystal to isotropic as well as from crystal to isotropic phases upon light irradiation due to the drastic conformational change of their macrocyclic backbone.     

Concise synthesis of catechin probes enabling analysis and imaging of EGCg

A concise synthesis of APDOEGCg (3) was accomplished. Due to the reactivity of its amine group, the compound could be easily converted to the fluorescein probe 21 and immunogen probe 22 efficiently. We then demonstrated the usefulness of the probes for imaging studies and the generation of antibodies.     

Mechanically Assisted Bioluminescence with Natural Luciferase

Mechanochemical analogues have recently been established for several enzymatic reactions, but they require periodic interruption of the reaction for sampling, dissolution, and (bio)chemical analysis to monitor their progress. By applying a mechanochemical procedure to induce bioluminescence analogous to that used by the marine ostracod Cypridina (Vargula) hilgendorfii, here we demonstrate that the light emitted by a bioluminescent reaction can be used to directly monitor the progress of a mechanoenzymatic reaction without sampling. Mechanical treatment of Cypridina luciferase with luciferin generates bright blue light which can be readily detected and analyzed spectroscopically. This mechanically assisted bioluminescence proceeds through a mechanism identical to that of bioluminescence in solution, but has higher activation energy due to being diffusion‐controlled in the viscous matrix. The results suggest that luciferases could be used as light‐emissive reporters of mechanoenzymatic reactions.     

Counterion Dependence of Dinitrogen Activation and Functionalization by a Diniobium Hydride Anion

We report the synthesis of anionic diniobium hydride complexes with a series of alkali metal cations (Li⁺, Na⁺, and K⁺) and the counterion dependence of their reactivity with N₂. Exposure of these complexes to N₂ initially produces the corresponding side‐on end‐on N₂ complexes, the fate of which depends on the nature of countercations. The lithium derivative undergoes stepwise migratory insertion of the hydride ligands onto the aryloxide units, yielding the end‐on bridging N₂ complex. For the potassium derivative, the N?N bond cleavage takes place along with H₂ elimination to form the nitride complex. Treatment of the side‐on end‐on N₂ complex with Me₃SiCl results in silylation of the terminal N atom and subsequent N?N bond cleavage along with H₂ elimination, giving the nitride‐imide‐bridged diniobium complex.     

Development of a High-Efficiency Decomposition Technology for Volatile Chemical Warfare Agent Sarin Using Dielectric Barrier Discharge

Plasma Chemistry and Plasma Processing - High-efficiency decomposition technology for volatile chemical warfare agent sarin was developed using a dielectric-barrier discharge (DBD). The power...     

Living Radical Polymerization of Styrene with Diphenyl Diselenide as a Photoiniferter. Synthesis of Polystyrene with Carbon-Carbon Double Bonds at Both Chain Ends

Abstract

Photopolymerization of styrene in the presence of diphenyl diselenide proceeded smoothly. The polymer yields and the number average molecular weight (Mn) of the polymers increased with reaction time. Further, a linear relationship was found for a plot of Mn for polystyrene versus polymer yield. These results indicate that this polymerization proceeds through a living radical mechanism. Photopolymerization of styrene with bis(p-tertbutylphenyl) diselenide afforded a telechelic polystyrene with terminal arylseleno groups. The resulting polymer underwent the reductive elimination of terminal seleno groups by the reaction with tri-n-butyltin hydride. Moreover, this telechelic polymer was treated with hydrogen peroxide to afford polystyrene with carbon-carbon double bonds at both chain ends.     

Grafting of Polymers onto a Crosslinked Polymer Carrying Carboxyl Groups as a Model Compound for Carbon Black

Abstract

A cation-exchange resin (a crosslinked polymer carrying carboxyl groups) was used as a model compound for carbon black, and the grafting of several polymers to the resin was investigated. Reaction of acyl chloride groups that had been placed on the ion-exchange resin with polymers having hydroxyl or amino groups, such as polypropylene glycol, polyethylene glycol, polybutadiene glycol, polyvinyl alcohol, silicone diol, silicone diamine, and polyethyleneimine, resulted in grafting to the ion-exchange resin. In further experiments, primary amino groups were placed on the cation-exchange resin by reaction of acyl chloride groups with ethylenediamine. It was found that ring-opening polymerization of γmethyl L-glutamate N-carboxyanhydride is initiated by the amino groups on the resin, and polypeptide was grafted from the cation-exchange resin. Therefore, the reactivity of carboxyl groups on the resin was found to be similar to that on carbon black. However, carboxyl groups on the resin failed to initiate the cationic polymerization of vinyl monomers, in contrast to those on carbon black. This suggested that the acidity of carboxyl groups on carbon black is greater than on the cation-exchange resin.     

Graft Polymerization of Vinyl Monomers Onto Carbon Black by Use of the Redox System Consisting of Ceric Ions and Carbon Black Carrying Alcoholic Hydroxyl Groups

The radical graft polymerization of vinyl monomers onto carbon black initiated by a redox system consisting of ceric ion and carbon black having alcoholic hydroxyl groups was investigated. The introduction of alcoholic hydroxyl groups onto the carbon black surface was achieved by the reaction of carbon black with alcoholic hydroxyl radicals, formed by the reaction of alcohol with benzoyl peroxide. The rate of the polymerization of acrylamide (AAm) initiated by the redox system was found to increase in the following order of hydroxyl groups: 1-hydroxyoctyl < 1-hydroxypropyl < 1-hydroxyethyl < hydroxymethyl < 1-hydroxy-1-methylethyl. In the redox polymerization, poly-AAm was effectively grafted onto carbon black by propagation of the polymer from the radical formed by the reaction of ceric ions with the alcoholic hydroxy groups. The percentage of grafting increased with increasing conversion. By use of this redox system, poly(acrylic acid), polyacrylonitrile, and poly(N-vinyl-2-pyrrolidone) could be grafted onto carbon black, but poly(methyl methacrylate) and polystyrene could not be so grafted. The graft polymerization of AAm by use of a redox system consisting of ceric ion and PVA-grafted carbon black was also investigated.