Synthesis, computational modeling, and properties of benzo-appended BODIPYs

A series of new functionalized mono- and dibenzo-appended BODIPY dyes were synthesized from a common tetrahydroisoindole precursor following two different synthetic routes. Route?A involved the assembly of the BODIPY core prior to aromatization, while in Route?B the aromatization step was performed first. In general, Route?A gave higher yields of the target dibenzo-BODIPYs, due to the ease of aromatization of the BODIPYs compared with the corresponding dipyrromethenes, probably due to their higher stability under the oxidative conditions (2,3-dichloro-5,6-dicyano-1,4-benzoquinone in refluxing toluene). However, due to the slow oxidation of highly electron-deficient BODIPY 3?c bearing a meso-C(6)F(5) group, dibenzo-BODIPY 4?c was obtained, in 35?% overall from dipyrromethane, only by Route?B. Computational calculations performed at the 6-31G(d,p) level are in agreement with the experimental results, showing similar relative energies for all reaction intermediates in both routes. In addition, BODIPY 3?c had the highest molecular electrostatic potential (MEPN), confirming its high electron deficiency and consequent resistance toward oxidation. X-ray analyses of eight BODIPYs and several intermediates show that benzannulation further enhances the planarity of these systems. The π-extended BODIPYs show strong red-shifted absorptions and emissions, about 50-60?nm per benzoannulated ring, at 589-658 and 596-680?nm, respectively. In particular, db-BODIPY 4?c bearing a meso-C(6)F(5) group showed the longest λ(max) of absorption and emission, along with the lowest fluorescence quantum yield (0.31 in CH(2)Cl(2)); on the other hand monobenzo-BODIPY 8 showed the highest quantum yield (0.99) of this series. Cellular investigations using human carcinoma HEp2 cells revealed high plasma membrane permeability for all dibenzo-BODIPYs, low dark- and photo-cytotoxicities and intracellular localization in the cell endoplasmic reticulum, in addition to other organelles. Our studies indicate that benzo-appended BODIPYs, in particular the highly stable meso-substituted BODIPYs, are promising fluorophores for bioimaging applications.     

Programmable multiple true-time-delay elements based on a Fourier-domain optical processor

A new technique to realize an array of multiple true-time-delay elements, which can be independently and continuously tuned, is reported. It is based on a WDM parallel signal processing approach in conjunction with a diffraction-based Fourier-domain optical signal processor. Programmable linear optical phase transfer functions are realized to obtain different electrical true-time delays. The technique can scale to a large number of wideband true-time-delay lines, with continuously tunable programmable delay. Results demonstrate multiple true-time-delay elements with independent tuning control and verify the concept by tuning the free spectral range of a microwave photonic notch filter. To our best knowledge, this is the first demonstration of multiple independently controllable true-time-delay lines for microwave photonic systems.     

A directly labeled TR-FRET assay for monitoring phosphoinositide-3-kinase activity

Phosphoinositide 3-kinases (PI3Ks) comprise a family of kinases that transfer the terminal phosphate of adenosine triphosphate to phosphoinositides at the 3-hydroxyl of the inositol ring to form phosphoinositide (3,4,5) triphosphate (PIP3). The PI3Ks have been shown to play key roles in cell growth, motility, morphology, and survival and thus are of interest as targets in anti-inflammatory and anti-oncogenic drug development. To facilitate identification of novel and selective inhibitors of PI3Ks, we have developed a TR-FRET assay that uses directly labeled reagents. The assay makes use of the high affinity binding of phosphoinositides to a Pleckstrin homology (PH) domain in the general receptor for phosphoinositides 1 (Grp1) protein. It monitors PIP3 produced from the enzymatic reaction by measuring its competition with Bodipy-FL-labeled PIP3 for binding to Terbium chelate-labeled Grp1. By using directly labeled reagents, this assay configuration offers higher sensitivity and faster binding/dissociation kinetics than existing non-radioactive assays, which are critical for competitive assay formats. The assay is homogenous, robust (Z' = 0.88), and simple and, thus, compatible with high throughput screening (HTS) processes.     

New perturbation bounds for the W-weighted Drazin inverse

The constructive perturbation bounds for the W-weighted Drazin inverse are derived by two approaches in this paper. One uses the matrixG = [(A+E)W]^l?(AW)^l, whereA, E ∈ C ^mxn ,W ∈ C ^nxm ,l = max Ind(AW), Ind[(A + E)W]. The other uses a technique proposed by G. Stewart and based on perturbation theory for invariant subspaces of a matrix. The new approaches to develop perturbation bounds for W-weighted Drazin inverse of a matrix extend the previous results in [19, 29, 31, 36, 42, 44]. Several examples which indicate the sharpness of the new perturbation bounds are presented.     

Quantum chemistry studies of adenosine 2503 methylation by S‐adenosylmethionine‐dependent enzymes

Ribosome methylation is important for life processes and is mainly catalyzed by radical S‐Adenosylmethionine (SAM) enzymes. Two SAM molecules serve as the cofactor by providing the 5 ′‐deoxyadenosyl radical for substrate activation and the methyl. Recently, Booker and coworkers (Science 2011, 332, 604) proposed an alternative mechanism for a pair of radical SAM enzymes, RlmN and Cfr, which respectively methylate the C2 and C8 of adenosine 2503. Their deuterium labeling experiments reveal that methyl group does not transfer directly from SAM to adenosine, instead it passes to Cys³⁵⁵ first, then onto adenosine. In this article, this new reaction mechanism is studied using density functional theory with B3LYP hybrid functional. The reaction system is simulated using small model compounds in the gas phase, and the protein environment is approximated using polarizable continuum model. The structures of the transition states and the intermediates are identified, and their free energies are calculated. The activation barriers indicate that the proposed reaction mechanism is plausible. The formation of a disulfide bond is found to be the rate‐limiting step. © 2012 Wiley Periodicals, Inc.     

Nanogel Multienzyme Mimics Synthesized by Biocatalytic ATRP and Metal Coordination for Bioresponsive Fluorescence Imaging

The design of enzyme mimics from stable and nonprotein systems is especially attractive for applications in highly specific cancer diagnosis and treatment, and it has become an emerging field in recent years. Herein, metal crosslinked polymeric nanogels (MPGs) were prepared using Fe^II ion coordinated biocompatible acryloyl‐lysine polymer brushes obtained from an enzyme‐catalyzed atomic transfer radical polymerization (ATRPase) method. The monoatomic and highly dispersed Fe ions in the MPGs serve as efficient crosslinkers of the gel network, and also as active centers of multienzyme mimics of superoxide dismutase (SOD) and peroxidase (POD). The catalytic activities were compared to those of conventional Fe‐based nanozymes. Studies on both cells and animals verify that efficient reactive oxygen species (ROS) responsive biofluorescence imaging can be successfully realized using the MPGs.     

Passive Q-switching of Pulsed and CW Nd: YAG Lasers with Cr~(4 ): YAG

Ｐａｓｓｉｖｅ　Ｑ－ｓｗｉｔｃｈｉｎｇ　ｏｆ　Ｐｕｌｓｅｄ　ａｎｄ　ＣＷ　Ｎｄ：ＹＡＧ　Ｌａｓｅｒｓ　ｗｉｔｈ　Ｃｒ￣（４＋）：ＹＡＧＰａｓｓｉｖｅＱ－ｓｗｉｔｃｈｉｎｇｏｆＰｕｌｓｅｄａｎｄＣＷＮｄ：ＹＡＧＬａｓｅｒｓｗｉｔｈＣｒ￣（４＋）：ＹＡＧ...     

Six new metal-organic frameworks with multi-carboxylic acids and imidazole-based spacers: syntheses, structures and properties

Six new metal-organic frameworks [Cu(obba)(bimb)·(obbaH(2))](n) (1), [Cu(obba)(bimb)](n) (2), [Zn(2)(obba)(2)(bimb)(2)(DMF)(2)(H(2)O)(3.5)](n) (3), [Ni(3)(2,2',4,4'-bptcH)(2)(bimb)(2)(H(2)O)(2)·(H(2)O)(2)](n) (4), [Ni(2)(bimb)(3)(H(2)O)(6)·(aobtc)·(DMF)(2)·(H(2)O)(2)](n) (5) and [Cd(3,3',4,4'-bptcH(2))(H(2)O)·(bimb)](n) (6), were obtained by reactions of 4,4'-bis(1-imidazolyl)biphenyl (bimb) and multi-carboxylic acids of 4,4'-oxybis(benzoic acid) (obbaH(2)), 2,2',4,4'-biphenyltetracarboxylate acid (2,2',4,4'-bptcH(4)), azoxybenzene-3,3',5,5'-tetracarboxylic acid (aobtcH(4)), and 3,3',4,4'-biphenyltetracarboxylate acid (3,3',4,4'-bptcH(4)) with corresponding metal salts under hydro/solvothermal conditions, respectively. Complexes 1-3 have entangled structures with different topologies: 1 is a 3-fold interpenetrating NbO three-dimensional (3D) network; 2 is a 3-fold interpenetrating dmp 3D net; 3 is a 6-fold interpenetrating dia 3D chiral net containing rare 1D helical chains with the same handedness. Complex 4 is an uninodal 6-connected network with a Sch?fli symbol of (4(8)6(4)8(3)) based on the trinuclear Ni(II) subunits, while complexes 5 and 6 are 1D chains. Interestingly, compound 6 represents the rare example of MOFs that exhibit high photocatalytic activity for dye degradation under visible light and shows good stability towards photocatalysis. Complexes 3 and 6 exhibit intense blue emissions in the solid state at room temperature whereas 3 appears to be a good candidate of novel hybrid inorganic-organic NLO material.     

Structural evolution of magnesium difluoride: from an amorphous deposit to a new polymorph

The structural evolution of magnesium difluoride from an amorphous deposit has been investigated by in situ powder X-ray diffraction (XRPD) and transmission electron microscopy (TEM). Crystalline MgF(2) was evaporated at different temperatures, which define the vapor pressures in the range from 4.7 × 10(-3) to 1.6 × 10(-1) mbar, and deposited onto various substrates. The temperature of the substrate was systematically varied from -228 to 25 °C. Magnesium difluoride was obtained as an amorphous sample when deposited on a substrate kept at a temperature below -100 °C. Upon warming, the deposit transforms via the CaCl(2) type of structure (β-MgF(2), at 70 °C) into the stable rutile type (α-MgF(2), 250 °C) by a displacive order-disorder phase transition. The new β-MgF(2) polymorph was refined assuming the orthorhombic CaCl(2) type of structure (Pnnm, No. 58) with the lattice constants a = 4.592(1) ?, b = 4.938(3) ?, and c = 2.959(3) ?. When deposited above -50 °C, samples crystallize directly in the rutile structure.