A novel catalytic heme cofactor in SfmD with a single thioether bond and a bis-His ligand set revealed by a de novo crystal structural and spectroscopic study

SfmD is a heme-dependent enzyme in the biosynthetic pathway of saframycin A. Here, we present a 1.78 Å resolution de novo crystal structure of SfmD, which unveils a novel heme cofactor attached to the protein with an unusual Hx_nHxxxC motif (n ∼ 38). This heme cofactor is unique in two respects. It contains a single thioether bond in a cysteine–vinyl link with Cys317, and the ferric heme has two axial protein ligands, i.e., His274 and His313. We demonstrated that SfmD heme is catalytically active and can utilize dioxygen and ascorbate for a single-oxygen insertion into 3-methyl-l-tyrosine. Catalytic assays using ascorbate derivatives revealed the functional groups of ascorbate essential to its function as a cosubstrate. Abolishing the thioether linkage through mutation of Cys317 resulted in catalytically inactive SfmD variants. EPR and optical data revealed that the heme center undergoes a substantial conformational change with one axial histidine ligand dissociating from the iron ion in response to substrate 3-methyl-l-tyrosine binding or chemical reduction by a reducing agent, such as the cosubstrate ascorbate. The labile axial ligand was identified as His274 through redox-linked structural determinations. Together, identifying an unusual heme cofactor with a previously unknown heme-binding motif for a monooxygenase activity and the structural similarity of SfmD to the members of the heme-based tryptophan dioxygenase superfamily will broaden understanding of heme chemistry.

The de novo crystal structure of SfmD reveals a novel c-type heme cofactor for promoting a monooxygenation reaction in the biosynthetic pathway of saframycin A.     

后交联型St-DVB大孔吸附树脂对低级醇类的吸附性能研究

分别在静态和动态条件下研究了Friedel—Crafs后交联型聚苯乙烯-二乙烯基苯(St-DVB)大孔吸附树脂对水溶液中多种低级一元醇的吸附性能，测定静态吸附等温线和动态吸附曲线，并分别按照Langmuir和Freundlich模型进行拟合．结果显示，树脂对水中低浓度低级一元醇的吸附过程属于放热的物理吸附过程，树脂吸附能力随着一元醇碳原子数的增加，即分子内疏水基团质量的增加而增加；树脂对直链醇的吸附能力稍强于同分异构的支链醇．     

ISOLATION,CHARACTERIZATION AND EXPRESSION OF THE COMPLEMENTARY DNA FOR HUMAN TUMOR NECROSIS FACTOR (TNF-α)

A cDNA for human TNF-α (615bp) was isolated by means of polymerase chain reaction (PCR) using first strand cDNA from PMA-induced HL-60 cells as template. The result from sequencing the 615 bp cDNA fragment indicated that it corresponded to the entire sequence of mature human TNF coding region. Direct expression of mature human TNF was achieved using a plasmid pHT-1 constructed by ligation of the cDNA and a synthetic DNA. The IPTG-induced bacterial product (hTNF) showed cytotoxicity to mouse L-929 cells. The TNF activity was further identified by neutralization of a specific monoclonal antibody against human TNF-α. Approximately 80,000 units of activity were detected per ml of culture at A600=2.     

三氧化铬超微粒的制备与表征

我们曾首次报道了Fe_2O_3超微粒溶胶具有大的三阶光学非线性响应,其X~((3))值与商品用的掺杂CdS_(1-x)Se玻璃相近,并对其产生机制进行了初步研究.本文用微乳液法制备了经十二烷基苯磺酸钠(DBS)和硬脂酸(ST)表面修饰的Cr_2O_3超微粒,并用TEM、IR、XPS及紫外可见吸收光谱进行了表征.     

Convenient and Efficient Synthesis of L—Rhamnopyranosyl Phosphoramidates via H—Phosphonate

It is known that saccharides linked to proteins via a phosphoester hinge can function as immunological determinants. Under regular physiological conditions, it has been suggested that the role of phosphonate group is to direct the protease towards basic substrates1. Phosphoramidon a, which was isolated from a culture filtrate, is a potent inhibitor of the thermolysin, a metallo-endopeptidase. It is a glycosylated dipeptide, which has a L-rhamnose attached to the N-terminal of Leu-Trp dipep…     

中药一枝黄花、黄连、天麻、蛇床子中8种微量元素的测定

采用原子吸收光谱仪对一枝黄花、黄连、天麻、蛇床子中Fe、Ca、Mg、Mn、Cr、Cu、Zn、Pb八种无机元素的含量进行了测定,为进一步研究其药理和用途提供基础。     

丙氨酰-谷氨酰胺的简便有效合成

谷氨酰胺 (Ｇｌｎ)是肠道必需氨基酸 ,是肠粘膜细胞氧化的重要燃料。肠粘膜缺乏Ｇｌｎ将严重损伤肠屏障功能 ,创伤性休克及化疗应激可加重损害 ,导致肠粘膜萎缩 ,肠道细菌移位 ,甚至促发脓毒症和多器官功能不全 (ＭＯＤＳ) [1] 。但Ｇｌｎ性质不稳定 ,不能耐高温消毒 ,因此 ,一般氨基酸制剂不含Ｇｌｎ。Ａｌａ Ｇｌｎ为Ｇｌｎ代谢前体 ,溶解度高 ,性质较Ｇｌｎ稳定 ,能耐受热灭菌 ,在体内数分钟即分解出Ｇｌｎ ,能部分补偿肠道所需Ｇｌｎ ,减少严重创伤及腹腔注射化疗药物 5 氟尿嘧啶 (5 ＦＵ)引发的小肠粘膜形态功能改变 ,细菌移位 ,降低…     

聚氨酯分子印章的制备和表征

“软平板印刷”微结构制备技术为微米和亚微米器件的制备提供了一条新的途径 [1] ,已被电子学家和材料学家所应用 ,近年来进入了生物学领域[2 ] .本实验室将这一方法与生物分子电子学相结合 ,提出了用于 DNA芯片在片合成的分子印章法 [3,4 ] .分子印章法的实质是接触压印与组合化学相结合的固相界面反应 .聚二甲氧基硅氧烷 ( PDMS)是一种软印刷的优良材料 [5] ,但是由于其疏水性和较差的机械性能 ,必须对其进行改性才能用来制备 DNA分子印章 [6 ] .　　聚氨酯作为一种功能材料 ,由于分子中交替的软、硬链段及其不同的热动力学性能而形成…     

3-(水杨酰肼)-丁基-2-酮肟和两个镍的酮肟配合物的合成和晶体结构

合成了3-(水杨酰肼)-丁基-2-酮肟H₂L(1，C₁₁H₁₃N₃O₃)和2个镍的3-(水杨酰肼)-丁基-2-酮肟化合物[Ni(HL)(CH₃COO^-)(C₅H₅N)₂](2)和[Ni(HL)₂]·2C₃H₇NO（3）。化合物1晶体属单斜晶系，空间群为P2₁/n，晶体学参数为：a=0.451 87(2) nm，b=2.086 8(1) nm，c=1.224 48(9) nm，β=94.974(3)°，V=1.150 3(1) nm³，Z=4，D_c=1.358 g·cm^-3，μ=0.101 mm^-1，F(000)=496，R=0.0435，wR=0.142 5。化合物2晶体属单斜晶系，空间群为P2₁/n，晶体学参数为：a=1.362 39(8) nm，b=1.345 37(6) nm，c=1.438 54(7) nm，β=113.138(3)°，V=2.424 6(2) nm³，Z=4，D_c=1.398 g·cm^-3，μ=0.843mm^-1，F(000)=1 064，R=0.042 4，wR=0.116 6。化合物3晶体属单斜晶系，空间群为P2₁/c，晶体学参数为：a=1.104 22(7) nm，b=2.860 1(1) nm，c=1.114 13(7)nm，β=114.589(5)°，V=3.199 5(3) nm³，Z=4，D_c=1.398 g·cm^-3，μ=0.667 mm^-1，F(000)=1 416，R=0.057 6，wR=0.1535。在化合物1晶体中，酮肟分子之间通过分子间氢键形成二维网状结构。在化合物2中，每个镍(Ⅱ)离子由1个3-(水杨酰肼)-丁基-2-酮肟的2个氮原子和1个氧原子，2个吡啶分子中的2个氮原子和1个乙酸根中的1个氧原子形成畸变的NiN₄O₂八面体配位构型，存在分子内氢键O-H(肟)…O(乙酸根)和O-H(酚)…N(酰肼)。在化合物3晶体中，每个镍(Ⅱ)离子由2个3-(水杨酰肼)-丁基-2-酮肟的4个氮原子和2个氧原子配位，形成畸变的NiN₄O₂八面体配位构型。晶体中存在O-H…O和O-H…N两种分子内氢键和O-H…O分子间氢键。     

废弃线路板化学分析采样、制样及检测方法

介绍废弃线路板中有回收价值元素和有害物质分析的采样、制样及检测技术。样品经过分类采样、剪切破碎和高温灰化制样,采用样品全分析或副批混合样分析。通过提高称样量、多次测定求平均值的办法,火试金富集-重量法测定贵金属金、银。湿法王水溶解样品,碘量法测定主体元素铜。电感耦合等离子体发射光谱(ICP-AES)法测定其它杂质元素,被测元素质量浓度在0~10μg/mL范围内与光谱强度呈良好线性关系,相关系数均大于0.9998。测定结果的相对标准偏差小于10%(n=5),加标回收率为97.0%~102.5%。该方法简单、快速,有效地解决了线路板样品不均匀而难采样,以及硬度、韧性强制样难,金属易包裹难分解的技术瓶颈,测定结果准确,具有代表性。该方法适用于废弃线路板化学成分分析,其它废弃电子产品检测可参考此方法。