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961.
Designing proteins with novel protein/protein binding properties can be achieved by combining the tools that have been developed independently for protein docking and protein design. We describe here the sequence-independent generation of protein dimer orientations by protein docking for use as scaffolds in protein sequence design algorithms. To dock monomers into sequence-independent dimer conformations, we use a reduced representation in which the side chains are approximated by spheres with atomic radii derived from known C2 symmetry-related homodimers. The interfaces of C2-related homodimers are usually more hydrophobic and protein core-like than the interfaces of heterodimers; we parameterize the radii for docking against this feature to capture and recreate the spatial characteristics of a hydrophobic interface. A fast Fourier transform-based geometric recognition algorithm is used for docking the reduced representation protein models. The resulting docking algorithm successfully predicted the wild-type homodimer orientations in 65 out of 121 dimer test cases. The success rate increases to approximately 70% for the subset of molecules with large surface area burial in the interface relative to their chain length. Forty-five of the predictions exhibited less than 1 A C(alpha) RMSD compared to the native X-ray structures. The reduced protein representation therefore appears to be a reasonable approximation and can be used to position protein backbones in plausible orientations for homodimer design. 相似文献
962.
We perform molecular dynamics simulations of the hydrophobic collapse of two paraffin plates to examine how the collapse is mediated by realistic paraffin-water attractive van der Waals forces. We explore several aspects of the drying transition between the plates, including the critical separation for drying and the critical size of the vapor bubble required for the nucleation of the drying event. We also investigate the kinetics of hydrophobic collapse and find that the hydrophobic collapse occurs in about 100 ps. We compare these results with the simulations with the plate-water van der Waals attractions turned off and with recent results on the hydrophobic collapse of multidomain proteins. Last, we discuss the relationship among the dewetting transition critical distance, van der Waals potential well depth, and water contact angle on solute surface using a simple macroscopic theory. 相似文献
963.
IntroductionItiswellknownthatmetallocenesactivatedwithmethylaluminoxane (MAO)arehighlyactivehomogeneousZiegler Nattacatalyststhatproducepolyolefinwithcon trolledstereoregularityandnarrowmolecularweightdistri bution ,1 4 however,themolecularweightofthepolym… 相似文献
964.
965.
The photofragmentation of CH_3I at 249 nm has been investigated by means of our crossed laser-molecular beam apparatus with rotatable supersonic beam source. The measured I~*/I yield ratio is about 4/1. The C—I bond dissociation energy obtained is 56±1 kcal mol~(-1). The vibrational energy distribution of CH_3 fragments has been roughly estimated. 相似文献
966.
Nieh MP Raghunathan VA Kline SR Harroun TA Huang CY Pencer J Katsaras J 《Langmuir : the ACS journal of surfaces and colloids》2005,21(15):6656-6661
We observe the spontaneous formation of path-dependent monodisperse and polydisperse phospholipid unilamellar vesicles (ULV) from two different equilibrium morphologies specifically, disklike micelles and extended lamellae, respectively. On heating beyond a temperature Tc, low temperature disklike micelles, or so-called bicelles, transform into lamellae. Dilution of the lamellar phase, at a fixed temperature, results in a complete unbinding transition and the formation of polydisperse ULV, demonstrating the instability of the lamellar phase. On the other hand, heating of a dilute bicellar phase above Tc results in monodisperse ULV, which on cooling revert back to bicelles for lipid concentrations phi > or = 0.5 wt % and transform into oblate ellipsoids for phi = 0.1 wt %, a morphology not previously seen in "bicellar" lipid mixtures. Monodisperse ULV reform on heating of the oblate ellipsoids. 相似文献
967.
The hetero Diels-Alder reaction of 1-amino-3-siloxy-1,3-butadiene (1a) with a range of unactivated aldehydes proceeds readily under remarkably mild conditions: at room temperature and in the absence of Lewis acid catalysts. The cycloadducts are formed in good yields and can be converted directly to the corresponding dihydro-4-pyrones using acetyl chloride. Ketones and imines are also reactive in hetero Diels-Alder reactions with this diene. 相似文献
968.
Xirong Huang Nianqin Jie Shuhua Han Wenjuan Zhang Jianping Huang 《Mikrochimica acta》1997,126(3-4):329-333
The coordination reactions of bromopyrogallol red (BPR) with tri- and hexavalent chromium in the presence of cetyltrimethylammonium bromide (CTAB) have been studied by absorption spectrometry. Results show that the reactions of Cr(VI) and Cr(III) with BPR in the absence or presence of CTAB have different temperature dependences. The reaction mechanism of Cr(VI) is that Cr(VI) is first reduced by BPR to Cr(III) and then the Cr(III) produced reacts with BPR. Based on the study on the coordination reactions and the effects of surfactants upon them, a simple, rapid, sensitive and accurate method for Cr speciation has been developed. Over the range of 0–8 g Cr(VI) or 0–12g Cr(III) per 25ml final volume, the calibration curve is linear with a detection limit of 3.5 × 10–7 mol/1 for Cr(VI) or 4.4 × 10–7 mol/1 for Cr(III). 相似文献
969.
Wang Y Liu Z Han B Huang Y Zhang J Sun D Du J 《The journal of physical chemistry. B》2005,109(25):12376-12379
We report a facile route to pattern polymer surfaces with the aid of compressed CO(2), termed the compressed-CO(2)-assisted imprint method. In this method, compressed CO(2) serves as a plasticizer for polymers (such as poly(methyl methylate) and polystyrene), which leads to a tremendous reduction in the glass transition temperature and viscosity of the polymers. Nylon fabrics and anode aluminum oxide porous membranes are used as molds, respectively, to pattern the softened polymers at relatively low temperatures, resulting in patterns at the scale of micrometers and nanometers on the surface of polymer films. The patterned structures can be tuned by changing CO(2) pressure and temperature in the imprinting process. This method is simple and environmentally benign. It also can be operated at low temperatures, for instance, ambient temperature. 相似文献
970.
Friedrichs G Colberg M Fikri M Huang Z Neumann J Temps F 《The journal of physical chemistry. A》2005,109(21):4785-4795
The determination of rate constants for fast chemical reactions from nonexponential cavity ringdown profiles requires a consideration of the interfering laser bandwidth effect that arises if the line width of the ringdown probe laser exceeds the absorption line width of the detected species. The deconvolution of the kinetics and the bandwidth effect can be accomplished with the extended simultaneous kinetics and ringdown (eSKaR) model presented by Guo et al. (Guo, et al. Phys. Chem. Chem. Phys. 2003, 5, 4622). We present a detailed validation of this eSKaR model by a corresponding investigation of the well-known rate constant for the reaction NH2 + NO. Line profiles of the pulsed ringdown probe laser and the NH2 absorption line were determined from forward modeling of experimental ringdown profiles and verified by narrow-bandwidth laser absorption measurements. In addition, the rate constant for the title reaction was evaluated using the eSKaR model and also by means of a conventional pump-probe approach with variable time delays between the photolysis (pump) and ringdown (probe) laser pulses. The resulting room temperature rate constant for the NH2 + NO reaction, k1= (8.5 +/- 1.0) x 10(12) cm(3) mol(-1) s(-1), and the room temperature pressure broadening coefficient of NH2, = 2.27 GHz/bar, measured on the A2A1<-- X2B1 transition at wavelengths around lambda = 597 nm, were found to be in excellent agreement with the available literature data. 相似文献