dM-Dim for carboxylic acid protection

The 1,3-dithian-2-yl-methyl (Dim) and its analogous groups including dimethyl-Dim (dM-Dim) can provide a new dimension of orthogonality for carboxylic acid protection. They can be deprotected under nearly neutral oxidative conditions. In this paper, the protection of carboxylic acid with dM-Dim, deprotection of dM-Dim ester with sodium periodate, stability of dM-Dim protected carboxylic acid under acidic and basic conditions, and selective deprotection of dM-Dim protected carboxylic acids in the presence of tertiary butyl and methyl esters are presented.     

Closed-surface hexameric metal-organic nanocapsules derived from cavitand ligands

Assembly of cavitand ligands, (4-), and Zn2+ ions yields a one-dimensional polymer comprised of hexameric, closed-surface, metal-organic nanocapsules.     

Comparative molecular dynamics and Monte Carlo study of statistical properties for coarse-grained heteropolymers

Employing a simple hydrophobic-polar heteropolymer model, we compare thermodynamic quantities obtained from Andersen and Nosé-Hoover molecular dynamics as well as replica-exchange Monte Carlo methods. We find qualitative correspondence in the results, but serious quantitative differences using the Nosé-Hoover chain thermostat. For analyzing the deviations, we study different parameterizations of the Nosé-Hoover chain thermostat. Autocorrelations from molecular dynamics and Metropolis Monte Carlo runs are also investigated.     

Sigma-borane complexes of iridium: synthesis and structural characterization

Reaction of NaBH4 with (tBuPOCOP)IrHCl affords the previously reported complex (tBuPOCOP)IrH2(BH3) (1) (tBuPOCOP = kappa(3)-C6H3-1,3-[OP(tBu)2]2). The structure of 1 determined from neutron diffraction data contains a B-H sigma-bond to iridium with an elongated B-H bond distance of 1.45(5) A. Compound 1 crystallizes in the space group P1 (Z = 2) with a = 8.262 (5) A, b = 12.264 (5) A, c = 13.394 (4) A, and V = 1256.2 (1) A(3) (30 K). Complex 1 can also be prepared by reaction of BH3 x THF with (tBuPOCOP)IrH2. Reaction of (tBuPOCOP)IrH2 with pinacol borane gave initially complex 2, which is assigned a structure analogous to that of 1 based on spectroscopic measurements. Complex 2 evolves H2 at room temperature leading to the borane complex 3, which is formed cleanly when 2 is subjected to dynamic vacuum. The structure of 3 has been determined by X-ray diffraction and consists of the (tBuPOCOP)Ir core with a sigma-bound pinacol borane ligand in an approximately square planar complex. Compound 3 crystallizes in the space group C2/c (Z = 4) with a = 41.2238 (2) A, b = 11.1233 (2) A, c = 14.6122 (3) A, and V = 6700.21 (19) A(3) (130 K). Reaction of (tBuPOCOP)IrH2 with 9-borobicyclononane (9-BBN) affords complex 4. Complex 4 displays (1)H NMR resonances analogous to 1 and exists in equilibrium with (tBuPOCOP)IrH2 in THF solutions.     

Thermodynamics and kinetics of a Gō proteinlike heteropolymer model with two-state folding characteristics

We present results of Monte Carlo computer simulations of a coarse-grained hydrophobic-polar Gō-like heteropolymer model and discuss thermodynamic properties and kinetics of an exemplified heteropolymer, exhibiting two-state folding behavior. It turns out that general, characteristic folding features of realistic proteins with a single free-energy barrier can also be observed in this simplified model, where the folding transition is primarily driven by the hydrophobic force.     

Protein environmental effects on iron‐sulfur clusters: A set of rules for constructing computational models for inner and outer coordination spheres

The structural properties and reactivity of iron‐sulfur proteins are greatly affected by interactions between the prosthetic groups and the surrounding amino acid residues. Thus, quantum chemical investigations of the structure and properties of protein‐bound iron‐sulfur clusters can be severely limited by truncation of computational models. The aim of this study was to identify, a priori, significant interactions that must be included in a quantum chemical model. Using the [2Fe‐2S] accessory cluster of the FeFe‐hydrogenase as a demonstrative example with rich electronic structural features, the electrostatic and covalent effects of the surrounding side chains, charged groups, and backbone moieties were systematically mapped through density functional theoretical calculations. Electron affinities, spin density differences, and delocalization indexes from the quantum theory of atoms in molecules were used to evaluate the importance of each interaction. Case studies for hydrogen bonding and charged side‐chain interactions were used to develop selection rules regarding the significance of a given protein environmental effect. A set of general rules is proposed for constructing quantum chemical models for iron‐sulfur active sites that capture all significant interactions from the protein environment. This methodology was applied to our previously used models in galactose oxidase and the 6Fe‐cluster of FeFe‐hydrogenase. © 2016 Wiley Periodicals, Inc.     

Dependency of particle sizes and colloidal stability of polyelectrolyte complex dispersions on polyanion structure and preparation mode investigated by dynamic light scattering and atomic force microscopy

Polyelectrolyte complex (PEC) dispersions were prepared by controlled mixing of three random copolymers of sodium 2-acrylamido-2-methylpropanesulfonate (AMPS) with either t-butyl acrylamide (TBA) [P(AMPS54-co-TBA46) and P(AMPS37-co-TBA63)] or methyl methacrylate (MM) [P(AMPS52-co-MM48)] with an ionene-type polycation, containing 95 mol % N,N-dimethyl-2-hydroxypropyleneammonium chloride repeat units (PCA5), with their structural characteristics being deeply investigated by dynamic light scattering (DLS) and atomic force microscopy (AFM). Shape, size, and polydispersity of the PEC dispersions were directly observed by AFM as a function of polyanion structure, the ratio between charges, n-/n+, and the titrant addition rate (TAR). The particle sizes increased and the colloidal stability decreased with the increase of the nonionic comonomer content and with the decrease of TAR. It was demonstrated that the medium particle sizes of the complex nanoparticles adsorbed on silicon wafers measured by AFM, in the dry state, were close but always lower than those measured by DLS, both before and after the complex stoichiometry.     

High-temperature series analysis of the p-state Potts glass model on d-dimensional hypercubic lattices

We analyze recently extended high-temperature series expansions for the “Edwards-Anderson” spin-glass susceptibility of the p-state Potts glass model on d-dimensional hypercubic lattices for the case of a symmetric bimodal distribution of ferro- and antiferromagnetic nearest-neighbor couplings . In these star-graph expansions up to order 22 in the inverse temperature , the number of Potts states p and the dimension d are kept as free parameters which can take any value. By applying several series analysis techniques to the new series expansions, this enabled us to determine the critical coupling K_c and the critical exponent of the spin-glass susceptibility in a large region of the two-dimensional (p,d)-parameter space. We discuss the thus obtained information with emphasis on the lower and upper critical dimensions of the model and present a careful comparison with previous estimates for special values of p and d. Received: 25 May 1998 / Revised and Accepted: 11 August 1998