An electrochemical study of enzymatic oligonucleotide digestion

This paper describes the synthesis and application of a novel ferrocene (Fc) label that can be efficiently attached to oligonucleotides. We demonstrate how pulse electrochemical methods can be used to measure very low concentrations of ferrocene label and, importantly, show good electroanalytical discrimination between a labelled oligonucleotide and an enzyme digested labelled oligonucleotide, in which the ferrocene label nucleotide conjugate has been released. Real time in situ analysis gives a much greater understanding of the process. Potential applications include the detection of specific nucleic acid sequences and measurement of nuclease activity.     

Heat of hydrogenation of 1,5-dehydroquadricyclane. A computational and experimental study of a highly pyramidalized alkene

The radical anion of the highly pyramidalized alkene 1,5-dehydroquadricyclane (1) was generated in the gas phase from the Squires reaction of 1,5-bis(trimethylsilyl)quadricyclane with F-/F2. The electron binding energy and proton affinity of 1*- were determined by bracketing experiments to be 0.6 +/- 0.1 eV and 386 +/- 5 kcal/mol, respectively. These values are in good agreement with values predicted by density functional theory (B3LYP/6-31+G*) and ab initio (CASPT2/6-31+G*) calculations. The experimental heat of hydrogenation of 1, obtained from a thermochemical cycle, was found to be 91 +/- 9 kcal/mol. This value of deltaH(H2) leads to values of 67 +/- 9 kcal/mol for the olefin strain energy (OSE) of 1, 172 +/- 9 kcal/mol for its heat of formation, and 23 +/- 9 kcal/mol for its pi bond dissociation enthalpy. Since the retro-Diels-Alder reaction of neutral 1 is computed to be highly exothermic, the finding that 1*- apparently does not undergo a retro-Diels-Alder reaction is of particular interest. The B3LYP/6-31+G* optimized geometry of 1 suggests that the bonding in this alkene is partially delocalized, presumably because the highly pyramidalized double bond in 1 interacts with the distal cyclopropane bonds in a manner that eventually leads to a retro-Diels-Alder reaction. The good agreement of the B3LYP and (2/2)CASPT2 values for the heat of hydrogenation and OSE of 1 with the experimentally derived values provides indirect evidence for the correctness of the B3LYP prediction that the equilibrium geometry of 1 lies part way along the reaction coordinate to the transition structure for the retro-Diels-Alder reaction.     

Polyurethane elastomers with hydrolytic and thermooxidative stability. I. Polyurethanes with N-alkylated polyamide soft blocks

Segmented polyurethanes with N-alkylated amides as soft blocks as prepared. Comparisons are made with both a poly(ester urethane) and a poly(ether urethane) with the same hard block; the poly(amide urethane) is more hydrolytically stable than the polyester containing material and demonstrates greater thermooxidative stability than that with the polyether moiety. The aliphatic poly(amide urethane)s remain transparent upon exposure to uv light.     

Acid-catalysed reactions of 3,5-dialkyl-spiro[2.5]Octa-2,5-dien-4-ones

Acid-catalysed ring opening of the spirodienones ($\text{2a}$) and ($\text{2b}$) using p-toluene-sulphonic acid affords the styrène derivatives ($\text{3a}$) and ($\text{3b}$), while treatment with acetic anhydride/H₂SO₄ affords the furan derivatives ($\text{4a}$) and ($\text{4b}$).     

Carbene Rearrangements Unsurpassed: Details of the C(7)H(6) Potential Energy Surface Revealed

The rearrangement of phenylcarbene (1) to 1,2,4,6-cycloheptatetraene (3) has been studied theoretically, using SCF, CASSCF, CASPT2N, DFT (B3LYP), CISD, CCSD, and CCSD(T) methods in conjunction with the 6-31G, 6-311+G, 6-311G(2d,p), cc-pVDZ, and DZd basis sets. Stationary points were characterized by vibrational frequency analyses at CASSCF(8,8)/6-31G and B3LYP/6-31G. Phenylcarbene (1) has a triplet ground state ((3)A") with a singlet-triplet separation (DeltaE(ST)) of 3-5 kcal mol(-)(1). In agreement with experiment, chiral 3 is the lowest lying structure on this part of the C(7)H(6) potential energy surface. Bicyclo[4.1.0]hepta-2,4,6-triene (2) is an intermediate in the rearrangement of 1 into 3, but it is unlikely to be observable experimentally due to a barrier height of only 1-2 kcal mol(-)(1). The enantiomers of 3 interconvert via the (1)A(2) state of cycloheptatrienylidene (4) with an activation energy of 20 kcal mol(-)(1). The "aromatic" (1)A(1) state, previously believed to be the lowest singlet state of 4, is roughly 10 kcal mol(-)(1) higher in energy than the (1)A(2) state, and, in violation of Hund's rule, (3)A(2) is also calculated to lie above (1)A(2) in energy. Thus, even if (3)A(2) were populated, it is likely to undergo rapid intersystem crossing to (1)A(2). We suggest (3)B(1)-4 is the metastable triplet observed by EPR.     

Inhibition of [FeFe]-hydrogenase by formaldehyde: proposed mechanism and reactivity of FeFe alkyl complexes

The mechanism for inhibition of [FeFe]-hydrogenases by formaldehyde is examined with model complexes. Key findings: (i) CH₂ donated by formaldehyde covalently link Fe and the amine cofactor, blocking the active site and (ii) the resulting Fe-alkyl is a versatile electrophilic alkylating agent. Solutions of Fe₂[(μ-SCH₂)₂NH](CO)₄(PMe₃)₂ (1) react with a mixture of HBF₄ and CH₂O to give three isomers of [Fe₂[(μ-SCH₂)₂NCH₂](CO)₄(PMe₃)₂]⁺ ([2]⁺). X-ray crystallography verified the NCH₂Fe linkage to an octahedral Fe(ii) site. Although [2]⁺ is stereochemically rigid on the NMR timescale, spin-saturation transfer experiments implicate reversible dissociation of the Fe–CH₂ bond, allowing interchange of all three diastereoisomers. Using ¹³CH₂O, the methylenation begins with formation of [Fe₂[(μ-SCH₂)₂N¹³CH₂OH](CO)₄(PMe₃)₂]⁺. Protonation converts this hydroxymethyl derivative to [2]⁺, concomitant with ¹³C-labelling of all three methylene groups. The Fe–CH₂N bond in [2]⁺ is electrophilic: PPh₃, hydroxide, and hydride give, respectively, the phosphonium [Fe₂[(μ-SCH₂)₂NCH₂PPh₃](CO)₄(PMe₃)₂]⁺, 1, and the methylamine Fe₂[(μ-SCH₂)₂NCH₃](CO)₄(PMe₃)₂. The reaction of [Fe₂[(μ-SCH₂)₂NH](CN)₂(CO)₄]²⁻ with CH₂O/HBF₄ gave [Fe₂[(μ-SCH₂)₂NCH₂CN](CN)(CO)₅]⁻ ([4]⁻), the result of reductive elimination from [Fe₂[(μ-SCH₂)₂NCH₂](CN)₂(CO)₄]⁻. The phosphine derivative [Fe₂[(μ-SCH₂)₂NCH₂CN](CN)(CO)₄(PPh₃)]⁻ ([5]⁻) was characterized crystallographically.

The mechanism for inhibition of [FeFe]-hydrogenases by formaldehyde is examined with model complexes.     

Low-Temperature Sputtered Ultralow-Loss Silicon Nitride for Hybrid Photonic Integration

Silicon-nitride-on-insulator (Si₃N₄) photonic circuits have seen tremendous advances in many applications, such as on-chip frequency combs, Lidar, telecommunications, and spectroscopy. So far, the best film quality has been achieved with low pressure chemical vapor deposition (LPCVD) and high-temperature annealing (1200°C). However, high processing temperatures pose challenges to the cointegration of Si₃N₄ with pre-processed silicon electronic and photonic devices, lithium niobate on insulator (LNOI), and Ge-on-Si photodiodes. This limits LPCVD as a front-end-of-line process. Here, ultralow-loss Si₃N₄ photonics based on room-temperature reactive sputtering is demonstrated. Propagation losses as low as 5.4 dB m⁻¹ after 400°C annealing and 3.5 dB m⁻¹ after 800°C annealing are achieved, enabling ring resonators with highest optical quality factors of > 10 million and an average quality factor of 7.5 million. To the best of the knowledge, these are the lowest propagation losses achieved with low temperature Si₃N₄. This ultralow loss enables the generation of microresonator soliton frequency combs with threshold powers of 1.1 mW. The introduced sputtering process offers full complementary metal oxide semiconductor (CMOS) compatibility with front-end silicon electronics and photonics. This could enable hybrid 3D integration of low loss waveguides with integrated lasers and lithium niobate on insulator.     

High-Temperature Pulsed-Field-Gradient Multidimensional NMR of Polymers

The application of pulsed-field-gradient (PFG) techniques has been particularly important in providing the ability to detect 2D and 3D NMR cross peaks from minor structural components in synthetic organic polymers. The lack of mobility in a large percentage of polymers leads to rapid T2 relaxation which prevents the use of pulse sequences, such as the HMBC experiment, that operate based on coherence transfer via small, long-range J couplings. High-temperature NMR increases molecular motion with corresponding line narrowing (e.g., polyethylenes are typically analyzed at 120 degrees C). However, until now, the requirement for high temperature has precluded the use of PFG methods. Here we present data from a new probe which is capable of performing high-temperature PFG coherence selection experiments at temperatures typical of those used in many polymer analyses. We illustrate the performance of this probe with PFG-HMBC spectra of a copolymer from ethylene/1-hexene/1-butene at 120 degrees C.     

Companion forms over totally real fields

We show that if F is a totally real field in which p splits completely and f is a mod p Hilbert modular form with parallel weight 2 < k < p, which is ordinary at all primes dividing p and has tamely ramified Galois representation at all primes dividing p, then there is a “companion form” of parallel weight k′ := p + 1 − k. This work generalises results of Gross and Coleman–Voloch for modular forms over Q.